BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031544
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002882500.1| pentatricopeptide repeat-containing protein ...    57   2e-06
ref|NP_187348.1| pentatricopeptide repeat-containing protein [Ar...    57   2e-06
ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Sela...    55   5e-06
ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [...    55   6e-06

>ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328340|gb|EFH58759.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 871

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 1   LRKAGKLGSVRVLFYSLLDD-MPLDNRFYNIVIGDFCKYGKLDQAQSLLNNMKEKGVSPN 177
           L KAG       LFYS+ +    LD R YNIVI  FCK GK+++A  LL  MK KG  P 
Sbjct: 562 LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPT 621

Query: 178 HFTFIALIEG 207
             T+ ++I+G
Sbjct: 622 VVTYGSVIDG 631


>ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75186627|sp|Q9M907.1|PP217_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g06920 gi|6728999|gb|AAF26996.1|AC016827_7
           hypothetical protein [Arabidopsis thaliana]
           gi|332640955|gb|AEE74476.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 1   LRKAGKLGSVRVLFYSLLDD-MPLDNRFYNIVIGDFCKYGKLDQAQSLLNNMKEKGVSPN 177
           L KAG       LFYS+ +    LD R YNIVI  FCK GK+++A  LL  MK KG  P 
Sbjct: 562 LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPT 621

Query: 178 HFTFIALIEG 207
             T+ ++I+G
Sbjct: 622 VVTYGSVIDG 631


>ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 35/142 (24%)
 Frame = +1

Query: 1   LRKAGKLGSVRVLFYSLLD-DMPLDNRFYNIVIGDFCKYGKLDQAQSLLNNMKEKGVSPN 177
           L K+G++  V  LF  +LD   P D   YN +I   CK G LD+A +L N MK++ + PN
Sbjct: 383 LCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPN 442

Query: 178 HFTFIALIEG----------------------CLTCQT------------IINETMEILL 255
            +TF  L++G                      CL  +T            +++E + +  
Sbjct: 443 VYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQS 502

Query: 256 KMSTEDCLLEYVETEYMLKAIF 321
           +M    C+ + V  E M++A F
Sbjct: 503 RMEDNGCISDAVTFEIMIRAFF 524


>ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
           gi|300150769|gb|EFJ17418.1| hypothetical protein
           SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/91 (31%), Positives = 50/91 (54%)
 Frame = +1

Query: 55  DDMPLDNRFYNIVIGDFCKYGKLDQAQSLLNNMKEKGVSPNHFTFIALIEGCLTCQTIIN 234
           D M  D   Y  V+   C+ GK+D+A  ++  MK KGV P+ FTF ALI G    +  ++
Sbjct: 75  DGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK-VD 133

Query: 235 ETMEILLKMSTEDCLLEYVETEYMLKAIFRD 327
           E +++  ++ T  C L+ V +  ++  + R+
Sbjct: 134 EALKLYKEILTSSCRLDAVSSSALITGLCRE 164


>ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
 Frame = +1

Query: 1   LRKAGKLGSVRVLFYSLLDD-MPLDNRFYNIVIGDFCKYGKLDQAQSLLNNMKEKGVSPN 177
           L + G L   R+L Y +L+   P++   Y +++  + K   L+ AQ L   MKE+G+ P+
Sbjct: 502 LCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPD 561

Query: 178 HFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLEYVETEYMLKAIFRDVVVLGRSTK 354
              F ALI+G L+    + E  E+ L+MS     + +V   +   ++ R +   GR T+
Sbjct: 562 AVAFTALIDG-LSKAGNVEEAYEVFLEMSA----IGFVPNNFAYNSLIRGLCDCGRVTE 615