BLASTX nr result
ID: Coptis25_contig00031534
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00031534
(729 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi... 122 6e-26
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera] 122 6e-26
ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|2... 121 1e-25
ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi... 120 4e-25
ref|XP_003623067.1| Pentatricopeptide repeat-containing protein ... 116 5e-24
>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product
[Vitis vinifera]
Length = 586
Score = 122 bits (307), Expect = 6e-26
Identities = 57/98 (58%), Positives = 73/98 (74%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
EA RLWD MVE+GCVP+ FTYNMLIKGFCK G EG++++E+M++ G LPNK+TY IL
Sbjct: 468 EAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILL 527
Query: 184 EGLCESGKGEEVMNALAVATSSGWISLDTDSWGVFVRK 297
EGL E G EV N L++A+S G +D + WGVF+ K
Sbjct: 528 EGLYELGLEGEVTNVLSMASSRG--GVDAECWGVFLAK 563
Score = 64.7 bits (156), Expect = 2e-08
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +1
Query: 7 AGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAE 186
A R++ E+++RG VP TY +L+ G+CK G+ + VK++++M E PN TY ++ E
Sbjct: 295 ARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIE 354
Query: 187 GLCESGKGEEVMNAL 231
C+ K EV+N L
Sbjct: 355 AYCKEKKSGEVLNLL 369
Score = 56.2 bits (134), Expect = 7e-06
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
+A ++ DEM E P+ TY ++I+ +CK K E + LL+DM+EK Y+P+ + +
Sbjct: 329 DAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVI 388
Query: 184 EGLCESGKGE 213
+ LCE GK E
Sbjct: 389 DMLCEEGKVE 398
>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 122 bits (307), Expect = 6e-26
Identities = 57/98 (58%), Positives = 73/98 (74%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
EA RLWD MVE+GCVP+ FTYNMLIKGFCK G EG++++E+M++ G LPNK+TY IL
Sbjct: 468 EAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILL 527
Query: 184 EGLCESGKGEEVMNALAVATSSGWISLDTDSWGVFVRK 297
EGL E G EV N L++A+S G +D + WGVF+ K
Sbjct: 528 EGLYELGLEGEVTNVLSMASSRG--GVDAECWGVFLAK 563
Score = 64.7 bits (156), Expect = 2e-08
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +1
Query: 7 AGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAE 186
A R++ E+++RG VP TY +L+ G+CK G+ + VK++++M E PN TY ++ E
Sbjct: 295 ARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIE 354
Query: 187 GLCESGKGEEVMNAL 231
C+ K EV+N L
Sbjct: 355 AYCKEKKSGEVLNLL 369
Score = 56.2 bits (134), Expect = 7e-06
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
+A ++ DEM E P+ TY ++I+ +CK K E + LL+DM+EK Y+P+ + +
Sbjct: 329 DAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVI 388
Query: 184 EGLCESGKGE 213
+ LCE GK E
Sbjct: 389 DMLCEEGKVE 398
>ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|222858420|gb|EEE95967.1|
predicted protein [Populus trichocarpa]
Length = 498
Score = 121 bits (304), Expect = 1e-25
Identities = 59/115 (51%), Positives = 82/115 (71%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
EAGRLWD+MVE+ C P+ FTYNMLIKGF KAG V EGV++LE+M++ G LPNKSTY +L
Sbjct: 385 EAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLI 444
Query: 184 EGLCESGKGEEVMNALAVATSSGWISLDTDSWGVFVRKVLANSENWRPVLDSIML 348
EGL ESG +V +++A +S +D DSW +F+ K++ N + LD +++
Sbjct: 445 EGLQESGMEGDVDKVMSMAMASR--EVDADSWDLFLHKIVGNLDCGTGALDRLLM 497
Score = 59.3 bits (142), Expect = 8e-07
Identities = 23/75 (30%), Positives = 47/75 (62%)
Frame = +1
Query: 7 AGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAE 186
A +++ E+ ++G +P TY +L+ G+CK G++S+ +K++++M G PN+ TY ++ +
Sbjct: 212 AEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMID 271
Query: 187 GLCESGKGEEVMNAL 231
C+ K E N +
Sbjct: 272 AYCKEKKSGEARNLI 286
>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 120 bits (300), Expect = 4e-25
Identities = 57/115 (49%), Positives = 83/115 (72%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
EA RLWD+M+E+GCVP+ FTYNMLIKGF K GK E +K++E+M++KG L N+STY IL
Sbjct: 419 EAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILV 478
Query: 184 EGLCESGKGEEVMNALAVATSSGWISLDTDSWGVFVRKVLANSENWRPVLDSIML 348
EGL + GK EE++N L++ SSG ++D +W +FV ++N +L+ I++
Sbjct: 479 EGLLKLGKREELLNILSMIISSG--AVDFKAWNLFVPHFVSNVNEQANILEKILI 531
Score = 59.7 bits (143), Expect = 6e-07
Identities = 26/75 (34%), Positives = 45/75 (60%)
Frame = +1
Query: 7 AGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAE 186
A R++ E+ + G +P TY +L+ G+ K G+ ++ VK++++M E G PN TY ++
Sbjct: 246 AKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIIL 305
Query: 187 GLCESGKGEEVMNAL 231
G C+ K E +N L
Sbjct: 306 GYCKERKSGEALNLL 320
Score = 59.7 bits (143), Expect = 6e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
+A ++ DEM E G P+ TY ++I G+CK K E + LL DM+EK Y+PN + +
Sbjct: 280 DAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVI 339
Query: 184 EGLCESGKGEE 216
+ LC G+ +E
Sbjct: 340 DVLCGEGRVKE 350
>ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498082|gb|AES79285.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 647
Score = 116 bits (290), Expect = 5e-24
Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Frame = +1
Query: 4 EAGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILA 183
EA RLWD+MVE+G P+ FTYNMLIKGFCK G EG+++LE+M+E LPNKSTY IL
Sbjct: 419 EAARLWDDMVEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEMLENRCLPNKSTYTILI 478
Query: 184 EG-LCESGKGEEVMNALAVATSSGWISLDTDSWGVFVRKVLANSENWRPVLDSIML 348
+G L G +E+ +++A S+G +D D W +FV+ V+ N LD I+L
Sbjct: 479 DGILLLGGMKQEINKVVSLAMSTG---VDADLWNIFVKPVVGNDNGGEAELDRILL 531
Score = 58.9 bits (141), Expect = 1e-06
Identities = 23/75 (30%), Positives = 48/75 (64%)
Frame = +1
Query: 7 AGRLWDEMVERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAE 186
A +++ E+++RG P V +Y +L+ GFC+ GK+ + +++++ M + G PN+ TY ++ +
Sbjct: 245 AMKVFREVLDRGWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQ 304
Query: 187 GLCESGKGEEVMNAL 231
C+ K E +N +
Sbjct: 305 AYCKEKKSGEAVNLI 319