BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031465
         (562 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              98   1e-28
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                104   2e-28
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    98   2e-28
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    96   7e-27
gb|AAK38382.1|AC079028_6 hypothetical protein [Arabidopsis thali...   101   4e-26

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 97.8 bits (242), Expect(2) = 1e-28
 Identities = 56/114 (49%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
 Frame = +2

Query: 98   PYNPEGNRQAELSNKTITNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAY 277
            P  P+GN QAE +NKTI +NLK++L   KG W +EL  VL AYRTTPR  T ETPFSL Y
Sbjct: 910  PRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYEELQPVLWAYRTTPRRPTGETPFSLVY 969

Query: 278  GVEAVILYEM-VAATT*TKA-VEEGSNWRILAADLNLAEERRDIACIKLEEYHR 433
            G+EAV+  E+ V     T+A + E  N  +L   L+   ERRD A I+++ Y +
Sbjct: 970  GMEAVVPAELNVPGLRRTEAPLNEEENSAMLNDSLDTINERRDQALIRIQNYQQ 1023



 Score = 53.9 bits (128), Expect(2) = 1e-28
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +1

Query: 436  YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTV 561
            YN +VK R F +GD VLRRV    ++E  GKLG+NWEGPY +
Sbjct: 1029 YNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYII 1070


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  104 bits (260), Expect(2) = 2e-28
 Identities = 55/112 (49%), Positives = 70/112 (62%)
 Frame = +2

Query: 98   PYNPEGNRQAELSNKTITNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAY 277
            P  P+GN QAE +NK I   LK+ L+D KG W +EL HVL AYRTTPR ST ETPFS+ Y
Sbjct: 915  PAYPQGNSQAEATNKVILAGLKKHLDDAKGRWVEELPHVLWAYRTTPRRSTGETPFSMTY 974

Query: 278  GVEAVILYEMVAATT*TKAVEEGSNWRILAADLNLAEERRDIACIKLEEYHR 433
            G+EAVI  E+   T         +N  +L   LN  EERR++A +K+  Y +
Sbjct: 975  GMEAVIPLELGFPTLKFDQYNNVTNHDMLHDSLNTIEERREVASVKMGSYQQ 1026



 Score = 46.6 bits (109), Expect(2) = 2e-28
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = +1

Query: 436  YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTV 561
            Y++ VK R    GDLVLR+V    R    GKLG NWEGPY +
Sbjct: 1032 YDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGPYRI 1073


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 97.8 bits (242), Expect(2) = 2e-28
 Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
 Frame = +2

Query: 107  PEGNRQAELSNKTITNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAYGVE 286
            P+GN QAE +NKTI +NLK++L   KG W DEL  VL AYRTTPR ST ETPFSL YG++
Sbjct: 1096 PQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMK 1155

Query: 287  AVILYEM-VAATT*TKA-VEEGSNWRILAADLNLAEERRDIACIKLEEY 427
            AV+  E+ V     T+A + E  N  +L   L+   ERRD A I+++ Y
Sbjct: 1156 AVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNY 1204



 Score = 53.1 bits (126), Expect(2) = 2e-28
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +1

Query: 436  YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTV 561
            YN +VK R F +GD VL+RV    ++E  GKLG+NWEGPY V
Sbjct: 1212 YNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIV 1253


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 95.9 bits (237), Expect(2) = 7e-27
 Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
 Frame = +2

Query: 98   PYNPEGNRQAELSNKTITNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAY 277
            P  P+ N QAE +NKTI + LK++L++KKGAWADEL+ VL +YRTTPR ST  TPFSL Y
Sbjct: 1594 PRYPQCNGQAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTY 1653

Query: 278  GVEAVILYEMVAATT*TKAV--EEGSNWRILAADLNLAEERRDIACIKLEEYHR 433
            G+EA+   E    T     +  +   N ++L  +L+  EE+RD A ++++ Y +
Sbjct: 1654 GMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTLEEQRDQALLRIQNYQQ 1707



 Score = 50.1 bits (118), Expect(2) = 7e-27
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +1

Query: 436  YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTV 561
            YN++VK R F  GDLVLR+V   T ++  GKLG +WEGPY +
Sbjct: 1713 YNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLI 1754


>gb|AAK38382.1|AC079028_6 hypothetical protein [Arabidopsis thaliana]
          Length = 257

 Score =  101 bits (252), Expect(2) = 4e-26
 Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
 Frame = +2

Query: 98  PYNPEGNRQAELSNKTITNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAY 277
           P+ P+GN QAE +NK I +N+K+ L+ KK  W+D L+ VL AYRTTPR STQETPFSLAY
Sbjct: 104 PHYPQGNGQAEAANKAILSNIKKILDSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAY 163

Query: 278 GVEAVILYEMVAATT*TKAVEEGS--NWRILAADLNLAEERRDIACIKLEEYHR 433
           G+EAVI    +  +    A    S  N ++L  +++  +ERRD A I+++ Y +
Sbjct: 164 GLEAVIPIVTIIPSVRRTASHANSDMNTQMLRDNMDFIDERRDQAMIRVQNYQQ 217



 Score = 41.6 bits (96), Expect(2) = 4e-26
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +1

Query: 436 YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLN 540
           YN  +K+R+F++G+LVLR+V   TR+   GKLG N
Sbjct: 223 YNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTN 257