BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031442
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containi...   114   8e-24
emb|CBI16904.3| unnamed protein product [Vitis vinifera]              114   8e-24
ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containi...   110   1e-22
gb|ABD96900.1| hypothetical protein [Cleome spinosa]                  107   8e-22
ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21

>ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/82 (68%), Positives = 64/82 (78%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQAHA MI + F PTV+VTNCLIQMYIKCS L +A K+FD MP RDTVSWNAM+FGY+ 
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 66  FGSDGLTLARSFFDIMPERDVV 1
            G  G  +A+  FD MPERDVV
Sbjct: 121 RGDIG--VAQKLFDAMPERDVV 140



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+ GY+ 
Sbjct: 597 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 656

Query: 66  FG 61
            G
Sbjct: 657 HG 658


>emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/82 (68%), Positives = 64/82 (78%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQAHA MI + F PTV+VTNCLIQMYIKCS L +A K+FD MP RDTVSWNAM+FGY+ 
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 66  FGSDGLTLARSFFDIMPERDVV 1
            G  G  +A+  FD MPERDVV
Sbjct: 121 RGDIG--VAQKLFDAMPERDVV 140



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+ GY+ 
Sbjct: 550 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 609

Query: 66  FG 61
            G
Sbjct: 610 HG 611


>ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  110 bits (275), Expect = 1e-22
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQAHA MI + FVPT+YV NCL+Q Y K S + YA K+FD+MP+RD +SWN MIFGY+ 
Sbjct: 25  GKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAE 84

Query: 66  FGSDGLTLARSFFDIMPERDVV 1
            G+ G   A+S FD MPERDVV
Sbjct: 85  IGNMG--FAQSLFDTMPERDVV 104


>gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/82 (64%), Positives = 63/82 (76%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQAHAHMI SGF PTV+V+NCL+Q+YI C  L YA KLFD MP RD VSWNAMIFGY++
Sbjct: 68  GKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAA 127

Query: 66  FGSDGLTLARSFFDIMPERDVV 1
             S+ +  A   F++MP RDVV
Sbjct: 128 --SNDMVRASLCFEMMPTRDVV 147



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYS- 70
           GKQ HAH+I       VY+ + L+ MY KC  L  +  +F++ P RD V+WNAMI GY+ 
Sbjct: 630 GKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAH 689

Query: 69  -SFGSDGLTLARS--FFDIMP 16
              G + + L  S    +IMP
Sbjct: 690 HGMGEEAIKLFESMVLMNIMP 710


>ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/82 (59%), Positives = 60/82 (73%)
 Frame = -3

Query: 246 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 67
           GKQ H  MI +GFVPT+YV NCL+Q Y K S + YA K+FD+MP RD +SWN +IFGY+ 
Sbjct: 25  GKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAG 84

Query: 66  FGSDGLTLARSFFDIMPERDVV 1
            G+ G   A+S FD MPERDVV
Sbjct: 85  IGNMG--FAQSLFDSMPERDVV 104