BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031409
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA93730.1| retrotransposon protein, putative, unclassified [...    56   8e-19
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group...    56   1e-18
gb|ABA94321.1| retrotransposon protein, putative, unclassified [...    56   1e-18
gb|ABG22578.1| retrotransposon protein, putative, unclassified [...    59   1e-18
emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group]          53   4e-18

>gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 656

 Score = 56.2 bits (134), Expect(3) = 8e-19
 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
 Frame = -1

Query: 254 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFG----TQPID 105
           +AF+VKDL PLRYFLGI+ ARS  GI  S RK V+DLL      G    T PID
Sbjct: 363 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPID 416



 Score = 51.6 bits (122), Expect(3) = 8e-19
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = -3

Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHGLTL 346
           L GLKQSPRAW + F H +  +GY QC  DHT F K  G  +
Sbjct: 293 LYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRGTNI 334



 Score = 30.4 bits (67), Expect(3) = 8e-19
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7
           PI+ NH+LC   G+P+     +Q LVG  IYL
Sbjct: 414 PIDRNHQLCAQSGDPVNKEA-YQRLVGRLIYL 444


>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711651|gb|ABF99446.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1393

 Score = 56.2 bits (134), Expect(3) = 1e-18
 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
 Frame = -1

Query: 254  RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFG----TQPID 105
            +AF+VKDL PLRYFLGI+ ARS  GI  S RK V+DLL      G    T PID
Sbjct: 1100 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPID 1153



 Score = 51.2 bits (121), Expect(3) = 1e-18
 Identities = 22/39 (56%), Positives = 25/39 (64%)
 Frame = -3

Query: 471  LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355
            L GLKQSPRAW + F H +  +GY QC  DHT F K  G
Sbjct: 1030 LYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRG 1068



 Score = 30.4 bits (67), Expect(3) = 1e-18
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 102  PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7
            PI+ NH+LC   G+P+     +Q LVG  IYL
Sbjct: 1151 PIDRNHQLCAQSGDPVDKEA-YQRLVGRLIYL 1181


>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1133

 Score = 55.8 bits (133), Expect(3) = 1e-18
 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
 Frame = -1

Query: 254  RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFG----TQPID 105
            +AF+VKDL PLRYFLGI+ ARS  GI  S RK V+DLL      G    T PID
Sbjct: 959  KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDIGMLGCRASTTPID 1012



 Score = 51.2 bits (121), Expect(3) = 1e-18
 Identities = 22/39 (56%), Positives = 25/39 (64%)
 Frame = -3

Query: 471  LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355
            L GLKQSPRAW + F H +  +GY QC  DHT F K  G
Sbjct: 889  LYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTIFYKHRG 927



 Score = 30.4 bits (67), Expect(3) = 1e-18
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 102  PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7
            PI+ NH+LC   G+P+     +Q LVG  IYL
Sbjct: 1010 PIDRNHQLCAQSGDPVDKEA-YQRLVGRLIYL 1040


>gb|ABG22578.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 836

 Score = 58.5 bits (140), Expect(3) = 1e-18
 Identities = 30/51 (58%), Positives = 34/51 (66%)
 Frame = -1

Query: 254 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFGTQPIDT 102
           RAF+VKDL PLRYFLGI+ ARS  GI FS RK ++DLL      G  P  T
Sbjct: 554 RAFEVKDLGPLRYFLGIEIARSSKGIVFSQRKYILDLLTDTGMIGCCPCIT 604



 Score = 48.5 bits (114), Expect(3) = 1e-18
 Identities = 21/39 (53%), Positives = 24/39 (61%)
 Frame = -3

Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355
           L GLKQSPRAW + F   + G+GY QC  DH  F K  G
Sbjct: 484 LYGLKQSPRAWFDRFRRAVCGMGYSQCNGDHMVFYKHRG 522



 Score = 30.4 bits (67), Expect(3) = 1e-18
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7
           PI+ NH+LC   G+P+     +Q LVG  IYL
Sbjct: 605 PIDRNHQLCAQSGDPVDEEA-YQRLVGRLIYL 635


>emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group]
          Length = 1015

 Score = 52.8 bits (125), Expect(3) = 4e-18
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = -1

Query: 290 DTNTIIIIK*TV-RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFGTQ 114
           DT  I  +K  + + F+VKDL  L+YFLGI+ ARS  GI  S RK V+DLL      G +
Sbjct: 691 DTQEIAQLKENISKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLCDTGMLGCR 750

Query: 113 PIDT 102
           P  T
Sbjct: 751 PAST 754



 Score = 50.4 bits (119), Expect(3) = 4e-18
 Identities = 22/39 (56%), Positives = 25/39 (64%)
 Frame = -3

Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355
           L GLKQSPRAW + F   M G+GY QC  DHT F +  G
Sbjct: 634 LYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHTLFYRHRG 672



 Score = 32.7 bits (73), Expect(3) = 4e-18
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = -3

Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7
           PIE NHKLC + G+P V    +Q LVG  IYL
Sbjct: 755 PIEQNHKLCAELGDP-VNKERYQRLVGRLIYL 785