BLASTX nr result
ID: Coptis25_contig00031409
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00031409 (482 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABA93730.1| retrotransposon protein, putative, unclassified [... 56 8e-19 gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group... 56 1e-18 gb|ABA94321.1| retrotransposon protein, putative, unclassified [... 56 1e-18 gb|ABG22578.1| retrotransposon protein, putative, unclassified [... 59 1e-18 emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group] 53 4e-18 >gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 656 Score = 56.2 bits (134), Expect(3) = 8e-19 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Frame = -1 Query: 254 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFG----TQPID 105 +AF+VKDL PLRYFLGI+ ARS GI S RK V+DLL G T PID Sbjct: 363 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPID 416 Score = 51.6 bits (122), Expect(3) = 8e-19 Identities = 22/42 (52%), Positives = 26/42 (61%) Frame = -3 Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHGLTL 346 L GLKQSPRAW + F H + +GY QC DHT F K G + Sbjct: 293 LYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRGTNI 334 Score = 30.4 bits (67), Expect(3) = 8e-19 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7 PI+ NH+LC G+P+ +Q LVG IYL Sbjct: 414 PIDRNHQLCAQSGDPVNKEA-YQRLVGRLIYL 444 >gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group] gi|108711651|gb|ABF99446.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1393 Score = 56.2 bits (134), Expect(3) = 1e-18 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Frame = -1 Query: 254 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFG----TQPID 105 +AF+VKDL PLRYFLGI+ ARS GI S RK V+DLL G T PID Sbjct: 1100 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPID 1153 Score = 51.2 bits (121), Expect(3) = 1e-18 Identities = 22/39 (56%), Positives = 25/39 (64%) Frame = -3 Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355 L GLKQSPRAW + F H + +GY QC DHT F K G Sbjct: 1030 LYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRG 1068 Score = 30.4 bits (67), Expect(3) = 1e-18 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7 PI+ NH+LC G+P+ +Q LVG IYL Sbjct: 1151 PIDRNHQLCAQSGDPVDKEA-YQRLVGRLIYL 1181 >gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1133 Score = 55.8 bits (133), Expect(3) = 1e-18 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Frame = -1 Query: 254 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFG----TQPID 105 +AF+VKDL PLRYFLGI+ ARS GI S RK V+DLL G T PID Sbjct: 959 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDIGMLGCRASTTPID 1012 Score = 51.2 bits (121), Expect(3) = 1e-18 Identities = 22/39 (56%), Positives = 25/39 (64%) Frame = -3 Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355 L GLKQSPRAW + F H + +GY QC DHT F K G Sbjct: 889 LYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTIFYKHRG 927 Score = 30.4 bits (67), Expect(3) = 1e-18 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7 PI+ NH+LC G+P+ +Q LVG IYL Sbjct: 1010 PIDRNHQLCAQSGDPVDKEA-YQRLVGRLIYL 1040 >gb|ABG22578.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 836 Score = 58.5 bits (140), Expect(3) = 1e-18 Identities = 30/51 (58%), Positives = 34/51 (66%) Frame = -1 Query: 254 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFGTQPIDT 102 RAF+VKDL PLRYFLGI+ ARS GI FS RK ++DLL G P T Sbjct: 554 RAFEVKDLGPLRYFLGIEIARSSKGIVFSQRKYILDLLTDTGMIGCCPCIT 604 Score = 48.5 bits (114), Expect(3) = 1e-18 Identities = 21/39 (53%), Positives = 24/39 (61%) Frame = -3 Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355 L GLKQSPRAW + F + G+GY QC DH F K G Sbjct: 484 LYGLKQSPRAWFDRFRRAVCGMGYSQCNGDHMVFYKHRG 522 Score = 30.4 bits (67), Expect(3) = 1e-18 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7 PI+ NH+LC G+P+ +Q LVG IYL Sbjct: 605 PIDRNHQLCAQSGDPVDEEA-YQRLVGRLIYL 635 >emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group] Length = 1015 Score = 52.8 bits (125), Expect(3) = 4e-18 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = -1 Query: 290 DTNTIIIIK*TV-RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK*VVDLLHSADKFGTQ 114 DT I +K + + F+VKDL L+YFLGI+ ARS GI S RK V+DLL G + Sbjct: 691 DTQEIAQLKENISKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLCDTGMLGCR 750 Query: 113 PIDT 102 P T Sbjct: 751 PAST 754 Score = 50.4 bits (119), Expect(3) = 4e-18 Identities = 22/39 (56%), Positives = 25/39 (64%) Frame = -3 Query: 471 LSGLKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 355 L GLKQSPRAW + F M G+GY QC DHT F + G Sbjct: 634 LYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHTLFYRHRG 672 Score = 32.7 bits (73), Expect(3) = 4e-18 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 102 PIELNHKLCDDKGEPIVYIGWFQ*LVGNYIYL 7 PIE NHKLC + G+P V +Q LVG IYL Sbjct: 755 PIEQNHKLCAELGDP-VNKERYQRLVGRLIYL 785