BLASTX nr result

ID: Coptis25_contig00031356 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031356
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65860.1| hypothetical protein VITISV_014849 [Vitis vinifera]   150   1e-34
ref|XP_002263816.2| PREDICTED: beta-amylase 1, chloroplastic-lik...   148   4e-34
emb|CBI34544.3| unnamed protein product [Vitis vinifera]              148   4e-34
ref|XP_004144400.1| PREDICTED: beta-amylase 1, chloroplastic-lik...   145   3e-33
ref|XP_002304568.1| predicted protein [Populus trichocarpa] gi|2...   145   3e-33

>emb|CAN65860.1| hypothetical protein VITISV_014849 [Vitis vinifera]
          Length = 542

 Score =  150 bits (378), Expect = 1e-34
 Identities = 70/102 (68%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   WGLVERDAPLSYDWRSYLEIVALAKHFGLKVRPVMAFHSFGV-PGDSCWIPLPHWVRQVM 178
           WGLVER+ P  Y+W+ Y+EIVALA+  GLKVR VMAFH  G  PGD  WIPLP WV + M
Sbjct: 130 WGLVEREEPRVYNWQGYMEIVALARRXGLKVRVVMAFHQCGTGPGDPSWIPLPQWVLEEM 189

Query: 179 IEQPDLAFSDRFGRRNGEYISLGCDVLPVLKGRSPMQAYSDF 304
              PDLAFSDRFG RN EYISLGCD+LPVL+GRSP+Q Y DF
Sbjct: 190 DRDPDLAFSDRFGTRNXEYISLGCDILPVLRGRSPIQTYXDF 231


>ref|XP_002263816.2| PREDICTED: beta-amylase 1, chloroplastic-like [Vitis vinifera]
          Length = 584

 Score =  148 bits (374), Expect = 4e-34
 Identities = 70/102 (68%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   WGLVERDAPLSYDWRSYLEIVALAKHFGLKVRPVMAFHSFGV-PGDSCWIPLPHWVRQVM 178
           WGLVER+ P  Y+W+ Y+EIVALA+  GLKVR VMAFH  G  PGD  WIPLP WV + M
Sbjct: 172 WGLVEREEPRVYNWQGYMEIVALARRCGLKVRVVMAFHQCGTGPGDPSWIPLPQWVLEEM 231

Query: 179 IEQPDLAFSDRFGRRNGEYISLGCDVLPVLKGRSPMQAYSDF 304
              PDLAFSDRFG RN EYISLGCD+LPVL+GRSP+Q Y DF
Sbjct: 232 DRDPDLAFSDRFGTRNMEYISLGCDILPVLRGRSPIQTYVDF 273


>emb|CBI34544.3| unnamed protein product [Vitis vinifera]
          Length = 266

 Score =  148 bits (374), Expect = 4e-34
 Identities = 70/102 (68%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   WGLVERDAPLSYDWRSYLEIVALAKHFGLKVRPVMAFHSFGV-PGDSCWIPLPHWVRQVM 178
           WGLVER+ P  Y+W+ Y+EIVALA+  GLKVR VMAFH  G  PGD  WIPLP WV + M
Sbjct: 5   WGLVEREEPRVYNWQGYMEIVALARRCGLKVRVVMAFHQCGTGPGDPSWIPLPQWVLEEM 64

Query: 179 IEQPDLAFSDRFGRRNGEYISLGCDVLPVLKGRSPMQAYSDF 304
              PDLAFSDRFG RN EYISLGCD+LPVL+GRSP+Q Y DF
Sbjct: 65  DRDPDLAFSDRFGTRNMEYISLGCDILPVLRGRSPIQTYVDF 106


>ref|XP_004144400.1| PREDICTED: beta-amylase 1, chloroplastic-like [Cucumis sativus]
          Length = 546

 Score =  145 bits (367), Expect = 3e-33
 Identities = 66/102 (64%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   WGLVERDAPLSYDWRSYLEIVALAKHFGLKVRPVMAFHSFGV-PGDSCWIPLPHWVRQVM 178
           WGLVE D P +Y+W+ YLEIVA+A+ FGLKVR V  F+  G+ P D  WIPLP WV + +
Sbjct: 126 WGLVETDVPCNYNWKGYLEIVAMARRFGLKVRAVFTFNQHGLGPDDPHWIPLPKWVLEEI 185

Query: 179 IEQPDLAFSDRFGRRNGEYISLGCDVLPVLKGRSPMQAYSDF 304
            + PDLA+SDRFGRRN EYI+LGCD LPVL+GRSP+QAY+DF
Sbjct: 186 NKDPDLAYSDRFGRRNSEYITLGCDTLPVLRGRSPIQAYADF 227


>ref|XP_002304568.1| predicted protein [Populus trichocarpa] gi|222842000|gb|EEE79547.1|
           predicted protein [Populus trichocarpa]
          Length = 437

 Score =  145 bits (367), Expect = 3e-33
 Identities = 66/102 (64%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   WGLVERDAPLSYDWRSYLEIVALAKHFGLKVRPVMAFHSFGV-PGDSCWIPLPHWVRQVM 178
           WG+VER+ P+ Y+W  Y ++VALA+  GLKVR V+AFH  G+ PGD  WI LP WV + M
Sbjct: 49  WGVVEREKPMVYNWGGYSDLVALARRCGLKVRAVLAFHQHGIGPGDPLWISLPQWVLEEM 108

Query: 179 IEQPDLAFSDRFGRRNGEYISLGCDVLPVLKGRSPMQAYSDF 304
            + PD+A+SDRFGRRN EYISLGCD+ PVLKGRSP+QAYSDF
Sbjct: 109 DKDPDIAYSDRFGRRNMEYISLGCDMFPVLKGRSPLQAYSDF 150


Top