BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031307
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi...   167   6e-40
emb|CBI21441.3| unnamed protein product [Vitis vinifera]              167   6e-40
ref|XP_002523554.1| pentatricopeptide repeat-containing protein,...   164   7e-39
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group] g...   137   7e-31

>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  167 bits (424), Expect = 6e-40
 Identities = 77/120 (64%), Positives = 99/120 (82%)
 Frame = +3

Query: 9   FDSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLH 188
           F S +PVWNALI+MYSK GC+  A S+F+NM  +D+VSWN+MIGG GM+G G  ALQLL 
Sbjct: 422 FSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLR 481

Query: 189 EMYHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQEYGVTPTVGHYSCVVDLLGRA 368
           +M HS + PNSVTFTSALSAC+HSGLV EG++LF+++T+++G TP + H+SCVVDLL RA
Sbjct: 482 DMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARA 541



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
 Frame = +3

Query: 6   DFDSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLL 185
           +FD  + V N+LI+MYSKSG V +   VF  M  +D++SWNSMI G   NG    +++LL
Sbjct: 156 EFD--LQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELL 213

Query: 186 HEMYHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQE--YGVTPTVGHYS 341
             M   G +P+ VT+ + + A    GL  E  ++F  + +     +T  V  YS
Sbjct: 214 ASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYS 267



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/72 (41%), Positives = 42/72 (58%)
 Frame = +3

Query: 36  ALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLHEMYHSGIQP 215
           AL+ MY K   ++ AL+VF  MD  D+V+WN+MI G      G  AL+   +M  SGI  
Sbjct: 334 ALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMN 393

Query: 216 NSVTFTSALSAC 251
           N +T ++ L AC
Sbjct: 394 NQITISTVLPAC 405


>emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  167 bits (424), Expect = 6e-40
 Identities = 77/120 (64%), Positives = 99/120 (82%)
 Frame = +3

Query: 9   FDSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLH 188
           F S +PVWNALI+MYSK GC+  A S+F+NM  +D+VSWN+MIGG GM+G G  ALQLL 
Sbjct: 620 FSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLR 679

Query: 189 EMYHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQEYGVTPTVGHYSCVVDLLGRA 368
           +M HS + PNSVTFTSALSAC+HSGLV EG++LF+++T+++G TP + H+SCVVDLL RA
Sbjct: 680 DMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARA 739



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/74 (40%), Positives = 44/74 (59%)
 Frame = +3

Query: 30  WNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLHEMYHSGI 209
           WN++I+ Y K   ++ AL+VF  MD  D+V+WN+MI G      G  AL+   +M  SGI
Sbjct: 532 WNSMISGYCKR--IQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGI 589

Query: 210 QPNSVTFTSALSAC 251
             N +T ++ L AC
Sbjct: 590 MNNQITISTVLPAC 603


>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 611

 Score =  164 bits (415), Expect = 7e-39
 Identities = 76/121 (62%), Positives = 96/121 (79%)
 Frame = +3

Query: 15  SAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLHEM 194
           S V VWNA+I+MY K GCV +A ++F +M  KD+VSWN+MIGG GM+G+G AAL+LL EM
Sbjct: 397 SVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEM 456

Query: 195 YHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQEYGVTPTVGHYSCVVDLLGRAGW 374
             SGI PNS TFTS LSAC+HSGLV EG +LF S+T++Y +TP + HYSC+VD+L RAG 
Sbjct: 457 ILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQ 516

Query: 375 F 377
           F
Sbjct: 517 F 517



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 35/98 (35%), Positives = 54/98 (55%)
 Frame = +3

Query: 12  DSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLHE 191
           +S + V N+LI+MY K G   +A  VF  M+ +D+ SWNSMI G   NG    A++LL+ 
Sbjct: 128 ESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNC 187

Query: 192 MYHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQ 305
           M   G +P+ VT+ + + A    G   E  ++   + Q
Sbjct: 188 MRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQ 225


>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  146 bits (368), Expect = 2e-33
 Identities = 68/122 (55%), Positives = 93/122 (76%)
 Frame = +3

Query: 6   DFDSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLL 185
           +F   +PV+NALI+MYS  GC+  A SVF+ M  +D+VSWN++IGG G +G G  AL+LL
Sbjct: 402 NFSGVIPVYNALIHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHGLGQTALELL 461

Query: 186 HEMYHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQEYGVTPTVGHYSCVVDLLGR 365
            EM  SG++P+ VTF+ ALSAC+HSGLV EGI+LF  +T+++ +TP   H+SCVVD+L R
Sbjct: 462 QEMSGSGVRPDLVTFSCALSACSHSGLVNEGIELFYRMTKDFSMTPAREHFSCVVDMLAR 521

Query: 366 AG 371
           AG
Sbjct: 522 AG 523



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
 Frame = +3

Query: 12  DSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLHE 191
           +S + V N++++MYSK G V +A  VF  M  +D+ SWNSM+ G   NG    A+++L  
Sbjct: 135 ESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGV 194

Query: 192 MYHS--GIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQEYGVTPTV 329
           M     G +P+ VT+ + + A    G   E  ++F  +     ++ T+
Sbjct: 195 MKKDGCGCEPDVVTWNTVMDAYCRMGQCCEASRVFGEIEDPNVISWTI 242


>ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
           gi|77549336|gb|ABA92133.1| pentatricopeptide, putative
           [Oryza sativa Japonica Group]
           gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa
           Japonica Group] gi|125576589|gb|EAZ17811.1| hypothetical
           protein OsJ_33354 [Oryza sativa Japonica Group]
          Length = 470

 Score =  137 bits (346), Expect = 7e-31
 Identities = 64/121 (52%), Positives = 89/121 (73%)
 Frame = +3

Query: 9   FDSAVPVWNALINMYSKSGCVEAALSVFTNMDMKDIVSWNSMIGGCGMNGNGPAALQLLH 188
           FDS + V NALINMY+K G V  + +VF+ M  +D+VSW++MI    ++G G  AL++  
Sbjct: 238 FDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYM 297

Query: 189 EMYHSGIQPNSVTFTSALSACAHSGLVTEGIQLFNSLTQEYGVTPTVGHYSCVVDLLGRA 368
           EM   G++PN +TFTS LS+C+HSGLVTEG ++F S+T+ +GV P   HY+C+VDLLGRA
Sbjct: 298 EMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRA 357

Query: 369 G 371
           G
Sbjct: 358 G 358