BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031229
         (659 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    57   8e-10
ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    66   5e-09
ref|XP_002310676.1| predicted protein [Populus trichocarpa] gi|2...    55   4e-08
emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]    58   9e-07
ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat...    49   9e-07

>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 57.4 bits (137), Expect(2) = 8e-10
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = -3

Query: 162 RLKRFLEVINLYRKIGLIGVVLDNYTLTILIHCYCHLNFVDCGFAVFGERIKRG 1
           R+K +  V+++YRK+   GV    YTLTILI+C CHL+ V  GF+V G+  K G
Sbjct: 116 RMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLG 169



 Score = 31.6 bits (70), Expect(2) = 8e-10
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 260 YEHALGYFNRAIEICPTPSVYTFNMLLKAM*RI 162
           ++ AL YFN+ + + P P +  FN LL A+ R+
Sbjct: 85  FDDALAYFNQMVHMNPFPCITQFNQLLAALVRM 117


>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 29/54 (53%), Positives = 42/54 (77%)
 Frame = -3

Query: 162 RLKRFLEVINLYRKIGLIGVVLDNYTLTILIHCYCHLNFVDCGFAVFGERIKRG 1
           ++KR+ +VI+LY+++ LIG+  D  TL ILI+CYC+LN VD G AV GE ++RG
Sbjct: 104 KIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRG 157


>ref|XP_002310676.1| predicted protein [Populus trichocarpa] gi|222853579|gb|EEE91126.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score = 55.1 bits (131), Expect(2) = 4e-08
 Identities = 23/54 (42%), Positives = 41/54 (75%)
 Frame = -3

Query: 162 RLKRFLEVINLYRKIGLIGVVLDNYTLTILIHCYCHLNFVDCGFAVFGERIKRG 1
           R+K++  V++L++++   G+  +  TL+ILI+C+C L+ VD GF+VFG+ +KRG
Sbjct: 52  RMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRG 105



 Score = 28.1 bits (61), Expect(2) = 4e-08
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 272 YLKTYEHALGYFNRAIEICPTPSVYTFNMLLKAM*RI 162
           Y    + AL  FNR ++  P P +  FN LL ++ R+
Sbjct: 17  YFGNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRM 53


>emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 58.2 bits (139), Expect(2) = 9e-07
 Identities = 28/54 (51%), Positives = 34/54 (62%)
 Frame = -3

Query: 162  RLKRFLEVINLYRKIGLIGVVLDNYTLTILIHCYCHLNFVDCGFAVFGERIKRG 1
            +L  +  V  +YRKI  +G+  D YTL ILIHC C L  V CGF VFG  +KRG
Sbjct: 958  KLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRG 1011



 Score = 20.4 bits (41), Expect(2) = 9e-07
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 251  ALGYFNRAIEICPTPSVYTFNMLLKAM 171
            A+  F+R++   P P   TFN LL ++
Sbjct: 930  AIKLFDRSLCSEPMPCTDTFNHLLASV 956


>ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 49.3 bits (116), Expect(2) = 9e-07
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = -3

Query: 162 RLKRFLEVINLYRKIGLIGVVLDNYTLTILIHCYCHLNFVDCGFAVFGERIKRG 1
           R+K +  V++LY+++   G+  + YTL ILI+ +CHLN +   F+V G+ +K G
Sbjct: 66  RMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLG 119



 Score = 29.3 bits (64), Expect(2) = 9e-07
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 269 LKTYEHALGYFNRAIEICPTPSVYTFNMLLKAM*RI 162
           + T + AL  FNR + + P PS+  F+ LL ++ R+
Sbjct: 32  VNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRM 67