BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031174
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   135   5e-30
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...   129   3e-28
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   125   5e-27
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   125   5e-27
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   119   3e-25

>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  135 bits (339), Expect = 5e-30
 Identities = 64/106 (60%), Positives = 88/106 (83%)
 Frame = +2

Query: 2   SGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFASQ 181
           S +V++ +R IQIP TLSR I QI+K RK L T +G+YPDDDEI++++GLS+AKI  AS+
Sbjct: 387 SKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASR 446

Query: 182 CLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 319
           CLR+VGS+DQK+G+  +AK+ EF  DTS++SPEEVVMRQHM +D++
Sbjct: 447 CLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMH 492


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score =  129 bits (323), Expect = 3e-28
 Identities = 59/104 (56%), Positives = 82/104 (78%)
 Frame = +2

Query: 8   LVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFASQCL 187
           +V +H+R IQIP  LSR IN+I+K RK L   HGRYPDD E+++F+GLS+AKI  A +CL
Sbjct: 388 IVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCL 447

Query: 188 RIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 319
           R+V S+DQK+G+   AK++EF  D SI++PEE VMRQHM++++Y
Sbjct: 448 RVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIY 491


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  125 bits (313), Expect = 5e-27
 Identities = 62/106 (58%), Positives = 78/106 (73%)
 Frame = +2

Query: 2   SGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFASQ 181
           S LV +H+R ++IP TL+R I QI+K RK LY  HGRYPDD+EI++F+GLS+AKIR A  
Sbjct: 388 STLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGN 447

Query: 182 CLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 319
           CLR+VGS DQ   D   A   EFT DTSIKSPEE  M+Q  +KD++
Sbjct: 448 CLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIH 493


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  125 bits (313), Expect = 5e-27
 Identities = 62/106 (58%), Positives = 78/106 (73%)
 Frame = +2

Query: 2   SGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFASQ 181
           S LV +H+R ++IP TL+R I QI+K RK LY  HGRYPDD+EI++F+GLS+AKIR A  
Sbjct: 438 STLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGN 497

Query: 182 CLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 319
           CLR+VGS DQ   D   A   EFT DTSIKSPEE  M+Q  +KD++
Sbjct: 498 CLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIH 543


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  119 bits (298), Expect = 3e-25
 Identities = 57/107 (53%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   SGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHG-RYPDDDEISRFSGLSIAKIRFAS 178
           S +V++H+R + IP ++ R INQI+K RKTL T HG +YP D++IS+ + LS+ KIR A+
Sbjct: 394 SMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAAN 453

Query: 179 QCLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 319
           QCL++VGS+++KVGD  S KF EFT DT+++SPEE VMRQ  ++D++
Sbjct: 454 QCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIH 500