BLASTX nr result

ID: Coptis25_contig00031170 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031170
         (974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318577.1| predicted protein [Populus trichocarpa] gi|2...   241   3e-61
ref|XP_004138330.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP...   238   1e-60
ref|XP_002273025.2| PREDICTED: LOW QUALITY PROTEIN: putative ATP...   226   8e-57
ref|XP_002514608.1| dead box ATP-dependent RNA helicase, putativ...   225   1e-56
emb|CBI15349.3| unnamed protein product [Vitis vinifera]              219   8e-55

>ref|XP_002318577.1| predicted protein [Populus trichocarpa] gi|222859250|gb|EEE96797.1|
           predicted protein [Populus trichocarpa]
          Length = 460

 Score =  241 bits (614), Expect = 3e-61
 Identities = 115/180 (63%), Positives = 137/180 (76%)
 Frame = +2

Query: 95  TAAQTNFCKVTTTWFGFFKIQRGSNEILDSVPLSLPNYSYESQAVWIRVPPSIKDAVENR 274
           TAAQ   CKVTTTWFGF+ IQRGSN++LD+  LSLP YSYESQAVWI VP SIK  VE +
Sbjct: 270 TAAQALSCKVTTTWFGFYCIQRGSNKVLDTFDLSLPKYSYESQAVWIPVPQSIKKLVEEK 329

Query: 275 KLSFPAGLHAVAHALCNVVPLFIQCNSSDLASECVNPNEIHYLSEGEIKYRRQKVPERIL 454
           + SF  GLHA +HAL NVVPL+++CNSSDLA EC NP++  Y             PERIL
Sbjct: 330 QFSFRGGLHAASHALLNVVPLYLRCNSSDLAPECPNPHDSRYF------------PERIL 377

Query: 455 LYDQHPGGSGVSAQLQPRFREILVASLELITTCRCSVETGCPSCVQSFSCHEYNEVLHKN 634
           +YDQHPGG+GVS Q+QP F E+L A+LEL+T C CS +TGCP+CVQS  CHEYNEV+HK+
Sbjct: 378 VYDQHPGGTGVSMQIQPYFTELLNAALELLTCCHCSGDTGCPNCVQSMVCHEYNEVIHKD 437


>ref|XP_004138330.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent helicase
            HRQ1-like [Cucumis sativus]
          Length = 1218

 Score =  238 bits (608), Expect = 1e-60
 Identities = 113/180 (62%), Positives = 136/180 (75%)
 Frame = +2

Query: 95   TAAQTNFCKVTTTWFGFFKIQRGSNEILDSVPLSLPNYSYESQAVWIRVPPSIKDAVENR 274
            T AQ N C+VTTTWFGF++IQ+GSN+ILDSV LSLP YSY SQAVWI VP S+K+ V+ +
Sbjct: 1033 TTAQANDCRVTTTWFGFYRIQKGSNQILDSVDLSLPKYSYNSQAVWIPVPQSVKEEVKRK 1092

Query: 275  KLSFPAGLHAVAHALCNVVPLFIQCNSSDLASECVNPNEIHYLSEGEIKYRRQKVPERIL 454
              +F AGLH  +HAL NVVPL I CN SDLA EC NP++  Y             PERIL
Sbjct: 1093 NFNFRAGLHGASHALLNVVPLRIICNMSDLAPECANPHDTRYF------------PERIL 1140

Query: 455  LYDQHPGGSGVSAQLQPRFREILVASLELITTCRCSVETGCPSCVQSFSCHEYNEVLHKN 634
            LYDQHPGG+G+S Q+QP F E+L A+ EL+T+CRC  ETGCP+CVQS +CHEYNEVLHK+
Sbjct: 1141 LYDQHPGGTGMSLQIQPVFIELLNAAFELLTSCRCYGETGCPNCVQSLACHEYNEVLHKD 1200


>ref|XP_002273025.2| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent helicase
            HRQ1-like [Vitis vinifera]
          Length = 1231

 Score =  226 bits (575), Expect = 8e-57
 Identities = 108/201 (53%), Positives = 141/201 (70%)
 Frame = +2

Query: 95   TAAQTNFCKVTTTWFGFFKIQRGSNEILDSVPLSLPNYSYESQAVWIRVPPSIKDAVENR 274
            T AQ + C+VTTTWFGF +I +GSN++ D+V LSLP YSY+SQAVW+RVP S+K AVE  
Sbjct: 1038 TTAQVHDCRVTTTWFGFRRIWKGSNKVFDTVELSLPTYSYQSQAVWVRVPQSVKTAVEIH 1097

Query: 275  KLSFPAGLHAVAHALCNVVPLFIQCNSSDLASECVNPNEIHYLSEGEIKYRRQKVPERIL 454
            + SF AGLHA +HA+ NVVPL++ CNSSDLA EC NP++  Y            +PERIL
Sbjct: 1098 RFSFRAGLHAASHAVLNVVPLYVICNSSDLAPECSNPHDTRY------------IPERIL 1145

Query: 455  LYDQHPGGSGVSAQLQPRFREILVASLELITTCRCSVETGCPSCVQSFSCHEYNEVLHKN 634
            LYD HPGG+G SAQ++  F E+L A+LEL+ +C C+ +TGCP+C+Q+ +C EYNE+LHK+
Sbjct: 1146 LYDPHPGGTGFSAQVRSHFTELLTAALELLMSCCCTGDTGCPNCIQNLACGEYNELLHKD 1205

Query: 635  XXXXXXXXXXXXXXSYSGRGH 697
                          SY G GH
Sbjct: 1206 AAIMIIKGVLEAEESYFG-GH 1225


>ref|XP_002514608.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223546212|gb|EEF47714.1| dead box ATP-dependent RNA
            helicase, putative [Ricinus communis]
          Length = 1189

 Score =  225 bits (574), Expect = 1e-56
 Identities = 107/180 (59%), Positives = 132/180 (73%)
 Frame = +2

Query: 95   TAAQTNFCKVTTTWFGFFKIQRGSNEILDSVPLSLPNYSYESQAVWIRVPPSIKDAVENR 274
            T AQ N+CKVTT WFGF++I+RG+  ILD   LSLP YSYESQAVWI+VP S+K +V+ +
Sbjct: 991  TTAQANYCKVTTIWFGFYRIERGTKRILDKCDLSLPKYSYESQAVWIQVPQSVKISVQ-K 1049

Query: 275  KLSFPAGLHAVAHALCNVVPLFIQCNSSDLASECVNPNEIHYLSEGEIKYRRQKVPERIL 454
               F  GLHA +HA+  VVPL++ CN SDLA EC NP++  +             PERIL
Sbjct: 1050 YFPFRKGLHAASHAILKVVPLYVFCNYSDLAPECPNPHDTRFF------------PERIL 1097

Query: 455  LYDQHPGGSGVSAQLQPRFREILVASLELITTCRCSVETGCPSCVQSFSCHEYNEVLHKN 634
            +YDQHPGG+GVS Q+QP F E+L A+LEL+T+C CS  TGCP CVQS +CHEYNEVLHKN
Sbjct: 1098 VYDQHPGGTGVSVQIQPYFTELLNAALELLTSCHCSGITGCPHCVQSMACHEYNEVLHKN 1157


>emb|CBI15349.3| unnamed protein product [Vitis vinifera]
          Length = 1188

 Score =  219 bits (558), Expect = 8e-55
 Identities = 108/207 (52%), Positives = 141/207 (68%), Gaps = 6/207 (2%)
 Frame = +2

Query: 95   TAAQTNFCKVTTTWFGFFKIQRGSNEILDSVPLSLPNYSYESQAVWIRVPPSIKDAVENR 274
            T AQ + C+VTTTWFGF +I +GSN++ D+V LSLP YSY+SQAVW+RVP S+K AVE  
Sbjct: 989  TTAQVHDCRVTTTWFGFRRIWKGSNKVFDTVELSLPTYSYQSQAVWVRVPQSVKTAVEIH 1048

Query: 275  KLSFPAGLHAVAHALCNVVPLFIQCNSSDLASECVNPNEIHYLSEGEIKYRRQKVPERIL 454
            + SF AGLHA +HA+ NVVPL++ CNSSDLA EC NP++  Y            +PERIL
Sbjct: 1049 RFSFRAGLHAASHAVLNVVPLYVICNSSDLAPECSNPHDTRY------------IPERIL 1096

Query: 455  LYDQHPGGSGVSAQ------LQPRFREILVASLELITTCRCSVETGCPSCVQSFSCHEYN 616
            LYD HPGG+G SAQ      ++  F E+L A+LEL+ +C C+ +TGCP+C+Q+ +C EYN
Sbjct: 1097 LYDPHPGGTGFSAQANTSLSVRSHFTELLTAALELLMSCCCTGDTGCPNCIQNLACGEYN 1156

Query: 617  EVLHKNXXXXXXXXXXXXXXSYSGRGH 697
            E+LHK+              SY G GH
Sbjct: 1157 ELLHKDAAIMIIKGVLEAEESYFG-GH 1182


Top