BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031127
         (790 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21495.3| unnamed protein product [Vitis vinifera]              252   6e-65
ref|XP_002276330.1| PREDICTED: uncharacterized protein LOC100268...   252   6e-65
ref|XP_002532942.1| conserved hypothetical protein [Ricinus comm...   243   3e-62
gb|AAM62516.1| unknown [Arabidopsis thaliana]                         188   1e-45
ref|NP_201300.1| Mitochondrial transcription termination factor ...   187   2e-45

>emb|CBI21495.3| unnamed protein product [Vitis vinifera]
          Length = 369

 Score =  252 bits (644), Expect = 6e-65
 Identities = 132/263 (50%), Positives = 187/263 (71%), Gaps = 2/263 (0%)
 Frame = +3

Query: 6   RFWWAKNPDNIETVVTLLKQHGFSDAHIESTVKTTPQILFAKINKTLIPKLKFFQENLGL 185
           RFWWAK+ +N ++V+  L+  GFS+AHI ++V+  PQILF+ I+KTL PK++FF E LGL
Sbjct: 50  RFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGPQILFSDIDKTLKPKVQFF-EQLGL 108

Query: 186 RDSDLGLFLSKNATLFTQSLERKLIPNTEILLKILSGDRKA--LIWIIGKRKWILYKFPK 359
             +DLG F+SKN+ + T SLE+KL+P  EIL K LS D     LI ++ +  W+L + P+
Sbjct: 109 VGADLGKFISKNSKVLTISLEKKLVPCIEILKKTLSDDENNGDLIRVLRRCTWVLSRNPE 168

Query: 360 SSLLVNIGLLEKYGIVGSQLSMIVKSRPILLVLEESKLCDLCREVERMGFSSKSRMFVHG 539
             LL NI  LE  GIVGSQLSM++  +P L V+++S L DL      MGFS +SRM V+ 
Sbjct: 169 L-LLSNIAFLESCGIVGSQLSMLLTRQPRLFVIKQSTLKDLVSRAVDMGFSIESRMLVYA 227

Query: 540 LLTLSCMSSETIRNKLEVFQSFGYSKEECVGMFRKAPGMPRVSVEKLRLGLEFFLKGIGF 719
           L T+SC+  ET+R K E+F+S+G++++EC+ MFR+ PG+ R S EKL+LG+EFF+  + F
Sbjct: 228 LYTISCLRDETLRKKFELFRSWGFTEQECIEMFRRTPGLLRASEEKLKLGMEFFMNTMKF 287

Query: 720 ERDVLLRMPRLLMYSMEKRVIPR 788
           E+ +L+  P +LM SME RVIPR
Sbjct: 288 EKTLLVHRPTILMLSMEDRVIPR 310


>ref|XP_002276330.1| PREDICTED: uncharacterized protein LOC100268158 [Vitis vinifera]
          Length = 388

 Score =  252 bits (644), Expect = 6e-65
 Identities = 132/263 (50%), Positives = 187/263 (71%), Gaps = 2/263 (0%)
 Frame = +3

Query: 6   RFWWAKNPDNIETVVTLLKQHGFSDAHIESTVKTTPQILFAKINKTLIPKLKFFQENLGL 185
           RFWWAK+ +N ++V+  L+  GFS+AHI ++V+  PQILF+ I+KTL PK++FF E LGL
Sbjct: 69  RFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGPQILFSDIDKTLKPKVQFF-EQLGL 127

Query: 186 RDSDLGLFLSKNATLFTQSLERKLIPNTEILLKILSGDRKA--LIWIIGKRKWILYKFPK 359
             +DLG F+SKN+ + T SLE+KL+P  EIL K LS D     LI ++ +  W+L + P+
Sbjct: 128 VGADLGKFISKNSKVLTISLEKKLVPCIEILKKTLSDDENNGDLIRVLRRCTWVLSRNPE 187

Query: 360 SSLLVNIGLLEKYGIVGSQLSMIVKSRPILLVLEESKLCDLCREVERMGFSSKSRMFVHG 539
             LL NI  LE  GIVGSQLSM++  +P L V+++S L DL      MGFS +SRM V+ 
Sbjct: 188 L-LLSNIAFLESCGIVGSQLSMLLTRQPRLFVIKQSTLKDLVSRAVDMGFSIESRMLVYA 246

Query: 540 LLTLSCMSSETIRNKLEVFQSFGYSKEECVGMFRKAPGMPRVSVEKLRLGLEFFLKGIGF 719
           L T+SC+  ET+R K E+F+S+G++++EC+ MFR+ PG+ R S EKL+LG+EFF+  + F
Sbjct: 247 LYTISCLRDETLRKKFELFRSWGFTEQECIEMFRRTPGLLRASEEKLKLGMEFFMNTMKF 306

Query: 720 ERDVLLRMPRLLMYSMEKRVIPR 788
           E+ +L+  P +LM SME RVIPR
Sbjct: 307 EKTLLVHRPTILMLSMEDRVIPR 329


>ref|XP_002532942.1| conserved hypothetical protein [Ricinus communis]
           gi|223527293|gb|EEF29446.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 366

 Score =  243 bits (620), Expect = 3e-62
 Identities = 131/263 (49%), Positives = 179/263 (68%), Gaps = 2/263 (0%)
 Frame = +3

Query: 6   RFWWAKNPDNIETVVTLLKQHGFSDAHIESTVKTTPQILFAKINKTLIPKLKFFQENLGL 185
           RF   K+ +  ++V   LK  G S++HI+S +   PQILFA ++K L PK+K FQ+ LGL
Sbjct: 43  RFSHIKSTEKPQSVHYFLKNLGLSNSHIQSAIHGAPQILFANVDKCLKPKVKLFQD-LGL 101

Query: 186 RDSDLGLFLSKNATLFTQSLERKLIPNTEILLKILSGDR--KALIWIIGKRKWILYKFPK 359
              DLG F+SKN+TL T SL++KL P  EIL ++L  D   K L+ ++ +  WI+ K PK
Sbjct: 102 VGYDLGKFISKNSTLLTASLDKKLSPRVEILKRLLLNDENNKDLVKVLTRCNWIISKNPK 161

Query: 360 SSLLVNIGLLEKYGIVGSQLSMIVKSRPILLVLEESKLCDLCREVERMGFSSKSRMFVHG 539
           S LL N+  LE  GIVGSQLSM+++ +P L +++ES L DL  +V  MGFS  SRM V+ 
Sbjct: 162 SRLLSNVAFLESCGIVGSQLSMLLRRQPRLFIMQESALRDLVSQVLNMGFSVNSRMLVYA 221

Query: 540 LLTLSCMSSETIRNKLEVFQSFGYSKEECVGMFRKAPGMPRVSVEKLRLGLEFFLKGIGF 719
           L T+SCMS ET   K+E+ + FG+S+ EC  MFRK PG+ R S +KL+LGL+FF+  I F
Sbjct: 222 LYTVSCMSHETFGKKIEILKKFGFSEYECTEMFRKQPGLLRSSEKKLKLGLDFFINTIKF 281

Query: 720 ERDVLLRMPRLLMYSMEKRVIPR 788
           +R+VL+  P  LM SME+RVIPR
Sbjct: 282 KREVLVYRPTCLMLSMEERVIPR 304


>gb|AAM62516.1| unknown [Arabidopsis thaliana]
          Length = 391

 Score =  188 bits (477), Expect = 1e-45
 Identities = 100/257 (38%), Positives = 163/257 (63%), Gaps = 1/257 (0%)
 Frame = +3

Query: 21  KNPDNIETVVTLLKQHGFSDAHIESTVKTTPQILFAKINKTLIPKLKFFQENLGLRDSDL 200
           K+ +   +V+ +LK + FSD  I+ +++  P+++F  + K L PKL+FF++ +G   S L
Sbjct: 66  KSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKD-IGFTGSGL 124

Query: 201 GLFLSKNATLFTQSLERKLIPNTEILLKILSGDRKALIWIIGKRKWILY-KFPKSSLLVN 377
           G F+S+N+++   SL +KLIP  EIL  I++   + L  I+ +  W+L  + P   LL N
Sbjct: 125 GKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPN 184

Query: 378 IGLLEKYGIVGSQLSMIVKSRPILLVLEESKLCDLCREVERMGFSSKSRMFVHGLLTLSC 557
           I  LE  GIVGSQL+ +++ +P +  L E KL         +GF+  SRM VH +++LS 
Sbjct: 185 ISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAIISLSS 244

Query: 558 MSSETIRNKLEVFQSFGYSKEECVGMFRKAPGMPRVSVEKLRLGLEFFLKGIGFERDVLL 737
           +S +T   K+++F + G+S++E   + R++PG+ R S +KL LG EF+LK +G ER+ L 
Sbjct: 245 LSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGIEREALA 304

Query: 738 RMPRLLMYSMEKRVIPR 788
           + P +L Y++EKRVIPR
Sbjct: 305 KRPCVLSYNLEKRVIPR 321


>ref|NP_201300.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana] gi|8843759|dbj|BAA97307.1|
           unnamed protein product [Arabidopsis thaliana]
           gi|332010591|gb|AED97974.1| Mitochondrial transcription
           termination factor family protein [Arabidopsis thaliana]
          Length = 391

 Score =  187 bits (476), Expect = 2e-45
 Identities = 100/257 (38%), Positives = 163/257 (63%), Gaps = 1/257 (0%)
 Frame = +3

Query: 21  KNPDNIETVVTLLKQHGFSDAHIESTVKTTPQILFAKINKTLIPKLKFFQENLGLRDSDL 200
           K+ +   +V+ +LK + FSD  I+ +++  P+++F  + K L PKL+FF++ +G   S L
Sbjct: 66  KSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKD-IGFTGSGL 124

Query: 201 GLFLSKNATLFTQSLERKLIPNTEILLKILSGDRKALIWIIGKRKWILY-KFPKSSLLVN 377
           G F+S+N+++   SL +KLIP  EIL  I++   + L  I+ +  W+L  + P   LL N
Sbjct: 125 GKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPN 184

Query: 378 IGLLEKYGIVGSQLSMIVKSRPILLVLEESKLCDLCREVERMGFSSKSRMFVHGLLTLSC 557
           I  LE  GIVGSQL+ +++ +P +  L E KL         +GF+  SRM VH +++LS 
Sbjct: 185 ISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSS 244

Query: 558 MSSETIRNKLEVFQSFGYSKEECVGMFRKAPGMPRVSVEKLRLGLEFFLKGIGFERDVLL 737
           +S +T   K+++F + G+S++E   + R++PG+ R S +KL LG EF+LK +G ER+ L 
Sbjct: 245 LSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALA 304

Query: 738 RMPRLLMYSMEKRVIPR 788
           + P +L Y++EKRVIPR
Sbjct: 305 KRPCVLSYNLEKRVIPR 321