BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031124
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40215.3| unnamed protein product [Vitis vinifera]              154   5e-36
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi...   154   5e-36
ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group] g...   126   2e-27
gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japo...   126   2e-27

>emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  154 bits (390), Expect = 5e-36
 Identities = 70/109 (64%), Positives = 87/109 (79%)
 Frame = -2

Query: 327 NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCGCKDGFWVFD 148
           N  TVT  L  CG+LGA KLG+Q H LIFKLG D  +FVGNSLI MY KCG +DGF VF+
Sbjct: 395 NQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFE 454

Query: 147 EMYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGIL 1
           EM E D++TWN +L+GCAQNG GKEA+ IFE+M+ +G+LP+Q+SFLG+L
Sbjct: 455 EMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVL 503



 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
 Frame = -2

Query: 327 NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCG-CKDGFWVF 151
           + S+ T  L  C ++G  ++G+ IH L  K G   + +V N LI+MY KCG  +DG  VF
Sbjct: 292 SDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVF 351

Query: 150 D--EMYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGIL 1
               M + D+V+W  I+    Q G G+ A+D+F  M A G+ PNQ++   +L
Sbjct: 352 RTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLL 403


>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  154 bits (390), Expect = 5e-36
 Identities = 70/109 (64%), Positives = 87/109 (79%)
 Frame = -2

Query: 327  NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCGCKDGFWVFD 148
            N  TVT  L  CG+LGA KLG+Q H LIFKLG D  +FVGNSLI MY KCG +DGF VF+
Sbjct: 686  NQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFE 745

Query: 147  EMYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGIL 1
            EM E D++TWN +L+GCAQNG GKEA+ IFE+M+ +G+LP+Q+SFLG+L
Sbjct: 746  EMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVL 794



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 32/141 (22%)
 Frame = -2

Query: 327 NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCG-CKDG---- 163
           + S+ T  L  C ++G  ++G+ IH L  K G   + +V N LI+MY KCG  +DG    
Sbjct: 554 SDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVF 613

Query: 162 ---------FW------------------VFDEMYEFDIVTWNTILIGCAQNGFGKEAVD 64
                     W                  VF++M + D+V+W  I+    Q G G+ A+D
Sbjct: 614 RTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALD 673

Query: 63  IFEKMKADGVLPNQISFLGIL 1
           +F  M A G+ PNQ++   +L
Sbjct: 674 LFLDMLARGIKPNQLTVTSLL 694


>ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  127 bits (318), Expect = 1e-27
 Identities = 56/109 (51%), Positives = 80/109 (73%)
 Frame = -2

Query: 327 NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCGCKDGFWVFD 148
           NS  +T  L  CG LG+ KLG+QIH +  K G+D+++ V N+L++MY KCGC D   VFD
Sbjct: 549 NSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHKVFD 608

Query: 147 EMYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGIL 1
            M E DI TWNT + GCAQ+G G+EA+ ++E M++ GVLPN+++F+G+L
Sbjct: 609 SMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLL 657



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = -2

Query: 321 STVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCGCKDGF-WVFDE 145
           S++T   + C  +GA + G+Q+H L  K G   + +V N+LI+MY KC   +    VF+ 
Sbjct: 419 SSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNR 478

Query: 144 MYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVL 31
           M   D V+WN+ +    QN   ++A  IF+ M +  V+
Sbjct: 479 MRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVV 516


>ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
           gi|51535971|dbj|BAD38052.1| putative pentatricopeptide
           (PPR) repeat-containing protein [Oryza sativa Japonica
           Group] gi|218190072|gb|EEC72499.1| hypothetical protein
           OsI_05871 [Oryza sativa Indica Group]
           gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa
           Japonica Group]
          Length = 922

 Score =  126 bits (317), Expect = 2e-27
 Identities = 57/109 (52%), Positives = 82/109 (75%)
 Frame = -2

Query: 327 NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCGCKDGFWVFD 148
           NS  +T  L  CGSLGA K+G+QIH +  KLG+D+++ V N+LI+MY KCGC D   +FD
Sbjct: 550 NSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIFD 609

Query: 147 EMYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGIL 1
            M E DI TWNTI+ G AQ+G G+EA+ +++ M++ GVLPN+++F+G+L
Sbjct: 610 LMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLL 658



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -2

Query: 321 STVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKC-GCKDGFWVFDE 145
           S++T     C ++ A + G Q+H L  K+G   + F  N+LI MY KC   +    VF  
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 144 MYEFDIVTWNTILIGCAQNGFGKEAVDIFEKM 49
           M   DIV+WN+ L    QN    EA + F+ M
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNM 511


>gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  126 bits (317), Expect = 2e-27
 Identities = 57/109 (52%), Positives = 82/109 (75%)
 Frame = -2

Query: 327 NSSTVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKCGCKDGFWVFD 148
           NS  +T  L  CGSLGA K+G+QIH +  KLG+D+++ V N+LI+MY KCGC D   +FD
Sbjct: 550 NSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIFD 609

Query: 147 EMYEFDIVTWNTILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGIL 1
            M E DI TWNTI+ G AQ+G G+EA+ +++ M++ GVLPN+++F+G+L
Sbjct: 610 LMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLL 658



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -2

Query: 321 STVTGFLVTCGSLGARKLGKQIHCLIFKLGLDADVFVGNSLIAMYCKC-GCKDGFWVFDE 145
           S++T     C ++ A + G Q+H L  K+G   + F  N+LI MY KC   +    VF  
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 144 MYEFDIVTWNTILIGCAQNGFGKEAVDIFEKM 49
           M   DIV+WN+ L    QN    EA + F+ M
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNM 511