BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031070
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    75   5e-12
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    68   7e-10
gb|EEC69280.1| hypothetical protein OsI_38331 [Oryza sativa Indi...    68   7e-10
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    67   1e-09
gb|EEC77095.1| hypothetical protein OsI_15508 [Oryza sativa Indi...    67   1e-09

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 32/90 (35%), Positives = 56/90 (62%)
 Frame = -3

Query: 294  QKCSSDWIKDGGKNTRFYHLSTIYRRRQNKIDKIKDDEGEWREGRTAVGTSLNQYFMNIF 115
            Q+   +W+K G +N+ F+H +TI RR+ NKI ++KDD G W +    V      YF  ++
Sbjct: 947  QRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYFTALY 1006

Query: 114  TSDHPERADQIMNLFDSIVSERENEILSSP 25
             S+ P++ +++++  D+ V+   N+ILSSP
Sbjct: 1007 QSNGPQQWEEVLDFVDTAVTAEMNKILSSP 1036


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1621

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
 Frame = -3

Query: 408 IKAAHEDLDRVLAKPFSIDN--------YNKAKDLKDILLGWYEKKQKCSSDWIKDGGKN 253
           +K   ++L+    +P S D         Y   K  + + + W   KQ+  ++W+  G +N
Sbjct: 551 VKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYW---KQRAHTNWLNKGDRN 607

Query: 252 TRFYHLSTIYRRRQNKIDKIKDDEGEWREGRTAVGTSLNQYFMNIFTSDHPERADQIMNL 73
           T F+H S   RRR+N+I+K++ ++G W E        + ++F  +FTS+  + + +++++
Sbjct: 608 TSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFTSNGGQNSQKLLDV 667

Query: 72  FDSIVSERENEILSSPPDQEDI 7
            D  VS   NE L +   +E++
Sbjct: 668 VDRKVSGAMNESLRAEFTREEV 689


>gb|EEC69280.1| hypothetical protein OsI_38331 [Oryza sativa Indica Group]
          Length = 320

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
 Frame = -3

Query: 408 IKAAHEDLDRVLAKPFSID--------NYNKAKDLKDILLGWYEKKQKCSSDWIKDGGKN 253
           +K   ++L+    +P S D         Y   K  + + + W   KQ+  ++W+  G +N
Sbjct: 97  VKKVKKELETCRRQPISRDPVVREEVLRYRLEKLEQQVDIYW---KQRAHTNWLNKGDRN 153

Query: 252 TRFYHLSTIYRRRQNKIDKIKDDEGEWREGRTAVGTSLNQYFMNIFTSDHPERADQIMNL 73
           T F+H S   RRR+N+I+K++ ++G W E        + ++F  +FTS+  + + +++++
Sbjct: 154 TSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFTSNGGQNSQKLLDV 213

Query: 72  FDSIVSERENEILSSPPDQEDI 7
            D  VS   NE L +   +E++
Sbjct: 214 VDRKVSGAMNESLRAEFTREEV 235


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
 Frame = -3

Query: 408  IKAAHEDLDRVLAKPFSIDNYNKAKDLKDILLGWYEKK--QKCSSDWIKDGGKNTRFYHL 235
            ++ A + L+ ++A   +  +  +A D  + +L   E    Q+   +W+K+G +NTRF+H 
Sbjct: 938  LEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFHS 997

Query: 234  STIYRRRQNKIDKIKDDEGEWREGRTAVGTSLNQYFMNIFTSDHPERADQIMNLFDSIVS 55
              ++R ++NKI K++D+ G      + + T   +YF  ++ +D     + +  LF   V+
Sbjct: 998  RAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQEKVT 1057

Query: 54   ERENEILSSPPDQEDI 7
            +  NE L     +E+I
Sbjct: 1058 DAMNEKLCQEFKEEEI 1073


>gb|EEC77095.1| hypothetical protein OsI_15508 [Oryza sativa Indica Group]
          Length = 1296

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
 Frame = -3

Query: 408  IKAAHEDLDRVLAKPFSIDNYNKAKDLKDILLGWYEKK--QKCSSDWIKDGGKNTRFYHL 235
            ++ A + L+ ++A   +  +  +A D  + +L   E    Q+   +W+K+G +NTRF+H 
Sbjct: 675  LEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFHS 734

Query: 234  STIYRRRQNKIDKIKDDEGEWREGRTAVGTSLNQYFMNIFTSDHPERADQIMNLFDSIVS 55
              ++R ++NKI K++D+ G      + + T   +YF  ++ +D     + +  LF   V+
Sbjct: 735  RAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKVT 794

Query: 54   ERENEILSSPPDQEDI 7
            +  NE L     +E+I
Sbjct: 795  DAMNEKLCQEFKEEEI 810