BLASTX nr result
ID: Coptis25_contig00031066
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00031066
(796 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi... 249 2e-76
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] 246 9e-76
ref|XP_002521565.1| pentatricopeptide repeat-containing protein,... 230 8e-68
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ... 228 4e-65
ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi... 226 3e-64
>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 249 bits (635), Expect(2) = 2e-76
Identities = 116/204 (56%), Positives = 152/204 (74%)
Frame = -2
Query: 612 FSALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 433
F A SG L YAR VF I PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H
Sbjct: 59 FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118
Query: 432 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 253
YTFPFLLKAC+ ++ LEET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD+
Sbjct: 119 YTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178
Query: 252 IAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
+ + D VSWNSM+D Y K +IE A +FN MP +N+ISWTS+I+GCV +G K+A++LF
Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238
Query: 72 QKMQIAGVIPDSTVLASILSACAN 1
+MQ AG+ D+ L S L ACA+
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACAD 262
Score = 63.9 bits (154), Expect(2) = 2e-76
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Frame = -1
Query: 760 TPVTQILFELK--HTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIFC 605
TP +Q+ E TL LL+RCSNM+EL+QIH M+KTGL+LD I AS+LL FC
Sbjct: 7 TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC 60
Score = 90.1 bits (222), Expect(2) = 2e-18
Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 4/204 (1%)
Frame = -2
Query: 600 STSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 421
S SGD+ AR +F + +T WN MI GY+ E A ++N M +I ++
Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219
Query: 420 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 241
++ C + +E + + G D + S L A A G L + + I +
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279
Query: 240 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
+I + ++D Y K D+E A +F +M K V WT++I+G G ++A+ F
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339
Query: 72 QKMQIAGVIPDSTVLASILSACAN 1
KMQ AGV P+ IL+AC++
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSH 363
Score = 28.9 bits (63), Expect(2) = 2e-18
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614
LL+ CS+M +E +QIH H+IK G + + + LL
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLL 160
Score = 56.6 bits (135), Expect = 6e-06
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = -2
Query: 417 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 244
LL+ C+ + EE QIH ++KTG D A+ LL A SG L AR +FDRI
Sbjct: 24 LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 243 GDIVSWNSMVDAYVKNKDIEAACRLFNQM 157
+ WN+M+ Y +K+ E A L++ M
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109
>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 246 bits (629), Expect(2) = 9e-76
Identities = 115/204 (56%), Positives = 151/204 (74%)
Frame = -2
Query: 612 FSALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 433
F A SG L YAR VF I PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H
Sbjct: 59 FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118
Query: 432 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 253
YTFPFLLKAC+ ++ EET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD+
Sbjct: 119 YTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178
Query: 252 IAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
+ + D VSWNSM+D Y K +IE A +FN MP +N+ISWTS+I+GCV +G K+A++LF
Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238
Query: 72 QKMQIAGVIPDSTVLASILSACAN 1
+MQ AG+ D+ L S L ACA+
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACAD 262
Score = 63.9 bits (154), Expect(2) = 9e-76
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Frame = -1
Query: 760 TPVTQILFELK--HTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIFC 605
TP +Q+ E TL LL+RCSNM+EL+QIH M+KTGL+LD I AS+LL FC
Sbjct: 7 TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC 60
Score = 90.1 bits (222), Expect(2) = 2e-18
Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 4/204 (1%)
Frame = -2
Query: 600 STSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 421
S SGD+ AR +F + +T WN MI GY+ E A ++N M +I ++
Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219
Query: 420 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 241
++ C + +E + + G D + S L A A G L + + I +
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279
Query: 240 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
+I + ++D Y K D+E A +F +M K V WT++I+G G ++A+ F
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339
Query: 72 QKMQIAGVIPDSTVLASILSACAN 1
KMQ AGV P+ IL+AC++
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSH 363
Score = 28.9 bits (63), Expect(2) = 2e-18
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614
LL+ CS+M +E +QIH H+IK G + + + LL
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLL 160
Score = 56.6 bits (135), Expect = 6e-06
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = -2
Query: 417 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 244
LL+ C+ + EE QIH ++KTG D A+ LL A SG L AR +FDRI
Sbjct: 24 LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 243 GDIVSWNSMVDAYVKNKDIEAACRLFNQM 157
+ WN+M+ Y +K+ E A L++ M
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109
>ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539243|gb|EEF40836.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 338
Score = 230 bits (587), Expect(2) = 8e-68
Identities = 111/205 (54%), Positives = 152/205 (74%), Gaps = 1/205 (0%)
Frame = -2
Query: 612 FSALSTSGDLLYARRVFHTIQS-PNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHT 436
F+A SG+L YA+ VF ++ S PNT++WN M++GY++ PE A++LY+QML +S+ H
Sbjct: 51 FAASPNSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHN 110
Query: 435 EYTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFD 256
YTFPFLLKAC+ L+ +E+ +Q+H+ I+K GF SDVY+ NSLLHAYA SG + SAR +FD
Sbjct: 111 GYTFPFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFD 170
Query: 255 RIAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHL 76
RI D VSWNS++D YVK + E A LF MP KN IS+T +I+G V +G K+A+ L
Sbjct: 171 RIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDL 230
Query: 75 FQKMQIAGVIPDSTVLASILSACAN 1
FQ+MQIAG+ PD VL ++LSACA+
Sbjct: 231 FQEMQIAGIKPDKIVLTNVLSACAH 255
Score = 53.5 bits (127), Expect(2) = 8e-68
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = -1
Query: 733 LKHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIF 608
+ TLSLLE+CS+M ELKQIH M KTG VL+TI+ S L F
Sbjct: 10 MTQTLSLLEKCSSMMELKQIHAQMFKTGSVLETITISELQAF 51
Score = 56.2 bits (134), Expect = 8e-06
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
Frame = -2
Query: 606 ALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYT 427
A + SG + AR +F I P+T WN +I GY E A L+ M + +
Sbjct: 155 AYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNA----IS 210
Query: 426 FPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIA 247
F ++ + +E + + G D ++L A A G L R + I
Sbjct: 211 FTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIK 270
Query: 246 EGDI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIH 79
+ D+ + ++ D Y K ++ A +F + K+V WT++I G G ++A++
Sbjct: 271 KNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIHGRGREALY 330
Query: 78 LFQ 70
Q
Sbjct: 331 CLQ 333
>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 518
Score = 228 bits (581), Expect(2) = 4e-65
Identities = 111/195 (56%), Positives = 139/195 (71%)
Frame = -2
Query: 588 DLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 409
+L YAR VF I SPNT MWN MI+ YSN +PE A+LLY+QMLH+SI H YTFPFLLK
Sbjct: 60 NLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLK 119
Query: 408 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 229
AC+ L+ L ET QIH I+K GF S+VY+ NSLL YA SG + SA LFD + DIVS
Sbjct: 120 ACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVS 179
Query: 228 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 49
WN+M+D Y+K ++E A ++F MP KNVISWTS+I G V +G K+A+ L Q+M +AG+
Sbjct: 180 WNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGI 239
Query: 48 IPDSTVLASILSACA 4
PD L+ LSACA
Sbjct: 240 KPDKITLSCSLSACA 254
Score = 47.0 bits (110), Expect(2) = 4e-65
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 733 LKHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLL 614
++ T+SLLERCSN+ ELKQIH ++K G + ++ SRLL
Sbjct: 11 VEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLL 50
Score = 78.2 bits (191), Expect = 2e-12
Identities = 52/197 (26%), Positives = 88/197 (44%)
Frame = -2
Query: 591 GDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 412
G++ A ++F + N W MI G+ + A+ L QML I+ + T L
Sbjct: 191 GNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSL 250
Query: 411 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 232
ACA L LE+ + IH++I K D V
Sbjct: 251 SACAGLGALEQGKWIHTYIGKNKIKIDP-------------------------------V 279
Query: 231 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 52
+++D YVK +++ A +F+++ K V +WT++I G G +A+ F +MQ AG
Sbjct: 280 LGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAG 339
Query: 51 VIPDSTVLASILSACAN 1
+ P S ++L+AC++
Sbjct: 340 IKPTSFTFTAVLTACSH 356
>ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 226 bits (577), Expect(2) = 3e-64
Identities = 106/195 (54%), Positives = 141/195 (72%)
Frame = -2
Query: 588 DLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 409
+L Y R VF +I SPNT +WN M++ YSN +PE A+LLY+QMLHNS+ H YTFPFLLK
Sbjct: 59 NLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLK 118
Query: 408 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 229
AC+ L+ EET+QIH+HI+K GF +VY+ NSLL YA SG + SA LF+++ DIVS
Sbjct: 119 ACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVS 178
Query: 228 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 49
WN M+D Y+K +++ A ++F MP KNVISWT++I G V G K+A+ L Q+M +AG+
Sbjct: 179 WNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGI 238
Query: 48 IPDSTVLASILSACA 4
PDS L+ LSACA
Sbjct: 239 KPDSITLSCSLSACA 253
Score = 45.4 bits (106), Expect(2) = 3e-64
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -1
Query: 730 KHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLI 611
+ T +LLERCSNMKEL QIH ++K G + + ++ S LL+
Sbjct: 11 EQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLV 50
Score = 80.1 bits (196), Expect(2) = 1e-15
Identities = 55/197 (27%), Positives = 88/197 (44%)
Frame = -2
Query: 591 GDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 412
G+L A ++F + N W MI G+ + A+ L QML I+ T L
Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSL 249
Query: 411 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 232
ACA L LE+ + IH++I K D C+
Sbjct: 250 SACAGLGALEQGKWIHTYIEKNEIKIDPVLG-----------------CV---------- 282
Query: 231 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 52
+ D YVK ++E A +F+++ K V +WT++I G G ++A+ F +MQ AG
Sbjct: 283 ----LTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAG 338
Query: 51 VIPDSTVLASILSACAN 1
+ P+S +IL+AC++
Sbjct: 339 INPNSITFTAILTACSH 355
Score = 29.3 bits (64), Expect(2) = 1e-15
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614
LL+ CS + +E +QIH H+IK G L+ + + LL
Sbjct: 116 LLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLL 152