BLASTX nr result
ID: Coptis25_contig00031066
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00031066 (796 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi... 249 2e-76 emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] 246 9e-76 ref|XP_002521565.1| pentatricopeptide repeat-containing protein,... 230 8e-68 ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ... 228 4e-65 ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi... 226 3e-64 >ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] Length = 622 Score = 249 bits (635), Expect(2) = 2e-76 Identities = 116/204 (56%), Positives = 152/204 (74%) Frame = -2 Query: 612 FSALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 433 F A SG L YAR VF I PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H Sbjct: 59 FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118 Query: 432 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 253 YTFPFLLKAC+ ++ LEET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD+ Sbjct: 119 YTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178 Query: 252 IAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73 + + D VSWNSM+D Y K +IE A +FN MP +N+ISWTS+I+GCV +G K+A++LF Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238 Query: 72 QKMQIAGVIPDSTVLASILSACAN 1 +MQ AG+ D+ L S L ACA+ Sbjct: 239 HRMQTAGIKLDNVALVSTLQACAD 262 Score = 63.9 bits (154), Expect(2) = 2e-76 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%) Frame = -1 Query: 760 TPVTQILFELK--HTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIFC 605 TP +Q+ E TL LL+RCSNM+EL+QIH M+KTGL+LD I AS+LL FC Sbjct: 7 TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC 60 Score = 90.1 bits (222), Expect(2) = 2e-18 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 4/204 (1%) Frame = -2 Query: 600 STSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 421 S SGD+ AR +F + +T WN MI GY+ E A ++N M +I ++ Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219 Query: 420 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 241 ++ C + +E + + G D + S L A A G L + + I + Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279 Query: 240 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73 +I + ++D Y K D+E A +F +M K V WT++I+G G ++A+ F Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339 Query: 72 QKMQIAGVIPDSTVLASILSACAN 1 KMQ AGV P+ IL+AC++ Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSH 363 Score = 28.9 bits (63), Expect(2) = 2e-18 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -1 Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614 LL+ CS+M +E +QIH H+IK G + + + LL Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLL 160 Score = 56.6 bits (135), Expect = 6e-06 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = -2 Query: 417 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 244 LL+ C+ + EE QIH ++KTG D A+ LL A SG L AR +FDRI Sbjct: 24 LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80 Query: 243 GDIVSWNSMVDAYVKNKDIEAACRLFNQM 157 + WN+M+ Y +K+ E A L++ M Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109 >emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] Length = 622 Score = 246 bits (629), Expect(2) = 9e-76 Identities = 115/204 (56%), Positives = 151/204 (74%) Frame = -2 Query: 612 FSALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 433 F A SG L YAR VF I PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H Sbjct: 59 FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118 Query: 432 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 253 YTFPFLLKAC+ ++ EET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD+ Sbjct: 119 YTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178 Query: 252 IAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73 + + D VSWNSM+D Y K +IE A +FN MP +N+ISWTS+I+GCV +G K+A++LF Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238 Query: 72 QKMQIAGVIPDSTVLASILSACAN 1 +MQ AG+ D+ L S L ACA+ Sbjct: 239 HRMQTAGIKLDNVALVSTLQACAD 262 Score = 63.9 bits (154), Expect(2) = 9e-76 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%) Frame = -1 Query: 760 TPVTQILFELK--HTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIFC 605 TP +Q+ E TL LL+RCSNM+EL+QIH M+KTGL+LD I AS+LL FC Sbjct: 7 TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC 60 Score = 90.1 bits (222), Expect(2) = 2e-18 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 4/204 (1%) Frame = -2 Query: 600 STSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 421 S SGD+ AR +F + +T WN MI GY+ E A ++N M +I ++ Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219 Query: 420 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 241 ++ C + +E + + G D + S L A A G L + + I + Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279 Query: 240 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73 +I + ++D Y K D+E A +F +M K V WT++I+G G ++A+ F Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339 Query: 72 QKMQIAGVIPDSTVLASILSACAN 1 KMQ AGV P+ IL+AC++ Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSH 363 Score = 28.9 bits (63), Expect(2) = 2e-18 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -1 Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614 LL+ CS+M +E +QIH H+IK G + + + LL Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLL 160 Score = 56.6 bits (135), Expect = 6e-06 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = -2 Query: 417 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 244 LL+ C+ + EE QIH ++KTG D A+ LL A SG L AR +FDRI Sbjct: 24 LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80 Query: 243 GDIVSWNSMVDAYVKNKDIEAACRLFNQM 157 + WN+M+ Y +K+ E A L++ M Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109 >ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 338 Score = 230 bits (587), Expect(2) = 8e-68 Identities = 111/205 (54%), Positives = 152/205 (74%), Gaps = 1/205 (0%) Frame = -2 Query: 612 FSALSTSGDLLYARRVFHTIQS-PNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHT 436 F+A SG+L YA+ VF ++ S PNT++WN M++GY++ PE A++LY+QML +S+ H Sbjct: 51 FAASPNSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHN 110 Query: 435 EYTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFD 256 YTFPFLLKAC+ L+ +E+ +Q+H+ I+K GF SDVY+ NSLLHAYA SG + SAR +FD Sbjct: 111 GYTFPFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFD 170 Query: 255 RIAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHL 76 RI D VSWNS++D YVK + E A LF MP KN IS+T +I+G V +G K+A+ L Sbjct: 171 RIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDL 230 Query: 75 FQKMQIAGVIPDSTVLASILSACAN 1 FQ+MQIAG+ PD VL ++LSACA+ Sbjct: 231 FQEMQIAGIKPDKIVLTNVLSACAH 255 Score = 53.5 bits (127), Expect(2) = 8e-68 Identities = 26/42 (61%), Positives = 31/42 (73%) Frame = -1 Query: 733 LKHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIF 608 + TLSLLE+CS+M ELKQIH M KTG VL+TI+ S L F Sbjct: 10 MTQTLSLLEKCSSMMELKQIHAQMFKTGSVLETITISELQAF 51 Score = 56.2 bits (134), Expect = 8e-06 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 4/183 (2%) Frame = -2 Query: 606 ALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYT 427 A + SG + AR +F I P+T WN +I GY E A L+ M + + Sbjct: 155 AYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNA----IS 210 Query: 426 FPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIA 247 F ++ + +E + + G D ++L A A G L R + I Sbjct: 211 FTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIK 270 Query: 246 EGDI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIH 79 + D+ + ++ D Y K ++ A +F + K+V WT++I G G ++A++ Sbjct: 271 KNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIHGRGREALY 330 Query: 78 LFQ 70 Q Sbjct: 331 CLQ 333 >ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 518 Score = 228 bits (581), Expect(2) = 4e-65 Identities = 111/195 (56%), Positives = 139/195 (71%) Frame = -2 Query: 588 DLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 409 +L YAR VF I SPNT MWN MI+ YSN +PE A+LLY+QMLH+SI H YTFPFLLK Sbjct: 60 NLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLK 119 Query: 408 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 229 AC+ L+ L ET QIH I+K GF S+VY+ NSLL YA SG + SA LFD + DIVS Sbjct: 120 ACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVS 179 Query: 228 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 49 WN+M+D Y+K ++E A ++F MP KNVISWTS+I G V +G K+A+ L Q+M +AG+ Sbjct: 180 WNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGI 239 Query: 48 IPDSTVLASILSACA 4 PD L+ LSACA Sbjct: 240 KPDKITLSCSLSACA 254 Score = 47.0 bits (110), Expect(2) = 4e-65 Identities = 21/40 (52%), Positives = 30/40 (75%) Frame = -1 Query: 733 LKHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLL 614 ++ T+SLLERCSN+ ELKQIH ++K G + ++ SRLL Sbjct: 11 VEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLL 50 Score = 78.2 bits (191), Expect = 2e-12 Identities = 52/197 (26%), Positives = 88/197 (44%) Frame = -2 Query: 591 GDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 412 G++ A ++F + N W MI G+ + A+ L QML I+ + T L Sbjct: 191 GNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSL 250 Query: 411 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 232 ACA L LE+ + IH++I K D V Sbjct: 251 SACAGLGALEQGKWIHTYIGKNKIKIDP-------------------------------V 279 Query: 231 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 52 +++D YVK +++ A +F+++ K V +WT++I G G +A+ F +MQ AG Sbjct: 280 LGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAG 339 Query: 51 VIPDSTVLASILSACAN 1 + P S ++L+AC++ Sbjct: 340 IKPTSFTFTAVLTACSH 356 >ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] Length = 516 Score = 226 bits (577), Expect(2) = 3e-64 Identities = 106/195 (54%), Positives = 141/195 (72%) Frame = -2 Query: 588 DLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 409 +L Y R VF +I SPNT +WN M++ YSN +PE A+LLY+QMLHNS+ H YTFPFLLK Sbjct: 59 NLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLK 118 Query: 408 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 229 AC+ L+ EET+QIH+HI+K GF +VY+ NSLL YA SG + SA LF+++ DIVS Sbjct: 119 ACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVS 178 Query: 228 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 49 WN M+D Y+K +++ A ++F MP KNVISWT++I G V G K+A+ L Q+M +AG+ Sbjct: 179 WNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGI 238 Query: 48 IPDSTVLASILSACA 4 PDS L+ LSACA Sbjct: 239 KPDSITLSCSLSACA 253 Score = 45.4 bits (106), Expect(2) = 3e-64 Identities = 20/40 (50%), Positives = 29/40 (72%) Frame = -1 Query: 730 KHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLI 611 + T +LLERCSNMKEL QIH ++K G + + ++ S LL+ Sbjct: 11 EQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLV 50 Score = 80.1 bits (196), Expect(2) = 1e-15 Identities = 55/197 (27%), Positives = 88/197 (44%) Frame = -2 Query: 591 GDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 412 G+L A ++F + N W MI G+ + A+ L QML I+ T L Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSL 249 Query: 411 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 232 ACA L LE+ + IH++I K D C+ Sbjct: 250 SACAGLGALEQGKWIHTYIEKNEIKIDPVLG-----------------CV---------- 282 Query: 231 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 52 + D YVK ++E A +F+++ K V +WT++I G G ++A+ F +MQ AG Sbjct: 283 ----LTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAG 338 Query: 51 VIPDSTVLASILSACAN 1 + P+S +IL+AC++ Sbjct: 339 INPNSITFTAILTACSH 355 Score = 29.3 bits (64), Expect(2) = 1e-15 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -1 Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614 LL+ CS + +E +QIH H+IK G L+ + + LL Sbjct: 116 LLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLL 152