BLASTX nr result

ID: Coptis25_contig00031066 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031066
         (796 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi...   249   2e-76
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]   246   9e-76
ref|XP_002521565.1| pentatricopeptide repeat-containing protein,...   230   8e-68
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ...   228   4e-65
ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi...   226   3e-64

>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  249 bits (635), Expect(2) = 2e-76
 Identities = 116/204 (56%), Positives = 152/204 (74%)
 Frame = -2

Query: 612 FSALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 433
           F A   SG L YAR VF  I  PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H  
Sbjct: 59  FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118

Query: 432 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 253
           YTFPFLLKAC+ ++ LEET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD+
Sbjct: 119 YTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178

Query: 252 IAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
           + + D VSWNSM+D Y K  +IE A  +FN MP +N+ISWTS+I+GCV +G  K+A++LF
Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238

Query: 72  QKMQIAGVIPDSTVLASILSACAN 1
            +MQ AG+  D+  L S L ACA+
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACAD 262



 Score = 63.9 bits (154), Expect(2) = 2e-76
 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = -1

Query: 760 TPVTQILFELK--HTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIFC 605
           TP +Q+  E     TL LL+RCSNM+EL+QIH  M+KTGL+LD I AS+LL FC
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC 60



 Score = 90.1 bits (222), Expect(2) = 2e-18
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 4/204 (1%)
 Frame = -2

Query: 600 STSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 421
           S SGD+  AR +F  +   +T  WN MI GY+     E A  ++N M   +I     ++ 
Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219

Query: 420 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 241
            ++  C    + +E   +   +   G   D  +  S L A A  G L   + +   I + 
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279

Query: 240 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
           +I    +    ++D Y K  D+E A  +F +M  K V  WT++I+G    G  ++A+  F
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339

Query: 72  QKMQIAGVIPDSTVLASILSACAN 1
            KMQ AGV P+      IL+AC++
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSH 363



 Score = 28.9 bits (63), Expect(2) = 2e-18
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614
           LL+ CS+M   +E +QIH H+IK G   +  + + LL
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLL 160



 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = -2

Query: 417 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 244
           LL+ C+ +   EE  QIH  ++KTG   D   A+ LL   A   SG L  AR +FDRI  
Sbjct: 24  LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 243 GDIVSWNSMVDAYVKNKDIEAACRLFNQM 157
            +   WN+M+  Y  +K+ E A  L++ M
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109


>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  246 bits (629), Expect(2) = 9e-76
 Identities = 115/204 (56%), Positives = 151/204 (74%)
 Frame = -2

Query: 612 FSALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 433
           F A   SG L YAR VF  I  PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H  
Sbjct: 59  FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118

Query: 432 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 253
           YTFPFLLKAC+ ++  EET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD+
Sbjct: 119 YTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178

Query: 252 IAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
           + + D VSWNSM+D Y K  +IE A  +FN MP +N+ISWTS+I+GCV +G  K+A++LF
Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238

Query: 72  QKMQIAGVIPDSTVLASILSACAN 1
            +MQ AG+  D+  L S L ACA+
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACAD 262



 Score = 63.9 bits (154), Expect(2) = 9e-76
 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = -1

Query: 760 TPVTQILFELK--HTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIFC 605
           TP +Q+  E     TL LL+RCSNM+EL+QIH  M+KTGL+LD I AS+LL FC
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC 60



 Score = 90.1 bits (222), Expect(2) = 2e-18
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 4/204 (1%)
 Frame = -2

Query: 600 STSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 421
           S SGD+  AR +F  +   +T  WN MI GY+     E A  ++N M   +I     ++ 
Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219

Query: 420 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 241
            ++  C    + +E   +   +   G   D  +  S L A A  G L   + +   I + 
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279

Query: 240 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 73
           +I    +    ++D Y K  D+E A  +F +M  K V  WT++I+G    G  ++A+  F
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339

Query: 72  QKMQIAGVIPDSTVLASILSACAN 1
            KMQ AGV P+      IL+AC++
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSH 363



 Score = 28.9 bits (63), Expect(2) = 2e-18
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614
           LL+ CS+M   +E +QIH H+IK G   +  + + LL
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLL 160



 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = -2

Query: 417 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 244
           LL+ C+ +   EE  QIH  ++KTG   D   A+ LL   A   SG L  AR +FDRI  
Sbjct: 24  LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 243 GDIVSWNSMVDAYVKNKDIEAACRLFNQM 157
            +   WN+M+  Y  +K+ E A  L++ M
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109


>ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539243|gb|EEF40836.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 338

 Score =  230 bits (587), Expect(2) = 8e-68
 Identities = 111/205 (54%), Positives = 152/205 (74%), Gaps = 1/205 (0%)
 Frame = -2

Query: 612 FSALSTSGDLLYARRVFHTIQS-PNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHT 436
           F+A   SG+L YA+ VF ++ S PNT++WN M++GY++   PE A++LY+QML +S+ H 
Sbjct: 51  FAASPNSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHN 110

Query: 435 EYTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFD 256
            YTFPFLLKAC+ L+ +E+ +Q+H+ I+K GF SDVY+ NSLLHAYA SG + SAR +FD
Sbjct: 111 GYTFPFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFD 170

Query: 255 RIAEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHL 76
           RI   D VSWNS++D YVK  + E A  LF  MP KN IS+T +I+G V +G  K+A+ L
Sbjct: 171 RIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDL 230

Query: 75  FQKMQIAGVIPDSTVLASILSACAN 1
           FQ+MQIAG+ PD  VL ++LSACA+
Sbjct: 231 FQEMQIAGIKPDKIVLTNVLSACAH 255



 Score = 53.5 bits (127), Expect(2) = 8e-68
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = -1

Query: 733 LKHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLIF 608
           +  TLSLLE+CS+M ELKQIH  M KTG VL+TI+ S L  F
Sbjct: 10  MTQTLSLLEKCSSMMELKQIHAQMFKTGSVLETITISELQAF 51



 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
 Frame = -2

Query: 606 ALSTSGDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYT 427
           A + SG +  AR +F  I  P+T  WN +I GY      E A  L+  M   +      +
Sbjct: 155 AYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNA----IS 210

Query: 426 FPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIA 247
           F  ++    +    +E   +   +   G   D     ++L A A  G L   R +   I 
Sbjct: 211 FTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIK 270

Query: 246 EGDI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIH 79
           + D+    +   ++ D Y K   ++ A  +F +   K+V  WT++I G    G  ++A++
Sbjct: 271 KNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIHGRGREALY 330

Query: 78  LFQ 70
             Q
Sbjct: 331 CLQ 333


>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513376|gb|AES94999.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  228 bits (581), Expect(2) = 4e-65
 Identities = 111/195 (56%), Positives = 139/195 (71%)
 Frame = -2

Query: 588 DLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 409
           +L YAR VF  I SPNT MWN MI+ YSN  +PE A+LLY+QMLH+SI H  YTFPFLLK
Sbjct: 60  NLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLK 119

Query: 408 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 229
           AC+ L+ L ET QIH  I+K GF S+VY+ NSLL  YA SG + SA  LFD +   DIVS
Sbjct: 120 ACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVS 179

Query: 228 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 49
           WN+M+D Y+K  ++E A ++F  MP KNVISWTS+I G V +G  K+A+ L Q+M +AG+
Sbjct: 180 WNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGI 239

Query: 48  IPDSTVLASILSACA 4
            PD   L+  LSACA
Sbjct: 240 KPDKITLSCSLSACA 254



 Score = 47.0 bits (110), Expect(2) = 4e-65
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -1

Query: 733 LKHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLL 614
           ++ T+SLLERCSN+ ELKQIH  ++K G +   ++ SRLL
Sbjct: 11  VEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLL 50



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 52/197 (26%), Positives = 88/197 (44%)
 Frame = -2

Query: 591 GDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 412
           G++  A ++F  +   N   W  MI G+      + A+ L  QML   I+  + T    L
Sbjct: 191 GNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSL 250

Query: 411 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 232
            ACA L  LE+ + IH++I K     D                                V
Sbjct: 251 SACAGLGALEQGKWIHTYIGKNKIKIDP-------------------------------V 279

Query: 231 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 52
              +++D YVK  +++ A  +F+++  K V +WT++I G    G   +A+  F +MQ AG
Sbjct: 280 LGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAG 339

Query: 51  VIPDSTVLASILSACAN 1
           + P S    ++L+AC++
Sbjct: 340 IKPTSFTFTAVLTACSH 356


>ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  226 bits (577), Expect(2) = 3e-64
 Identities = 106/195 (54%), Positives = 141/195 (72%)
 Frame = -2

Query: 588 DLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 409
           +L Y R VF +I SPNT +WN M++ YSN  +PE A+LLY+QMLHNS+ H  YTFPFLLK
Sbjct: 59  NLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLK 118

Query: 408 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 229
           AC+ L+  EET+QIH+HI+K GF  +VY+ NSLL  YA SG + SA  LF+++   DIVS
Sbjct: 119 ACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVS 178

Query: 228 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 49
           WN M+D Y+K  +++ A ++F  MP KNVISWT++I G V  G  K+A+ L Q+M +AG+
Sbjct: 179 WNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGI 238

Query: 48  IPDSTVLASILSACA 4
            PDS  L+  LSACA
Sbjct: 239 KPDSITLSCSLSACA 253



 Score = 45.4 bits (106), Expect(2) = 3e-64
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = -1

Query: 730 KHTLSLLERCSNMKELKQIHTHMIKTGLVLDTISASRLLI 611
           + T +LLERCSNMKEL QIH  ++K G + + ++ S LL+
Sbjct: 11  EQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLV 50



 Score = 80.1 bits (196), Expect(2) = 1e-15
 Identities = 55/197 (27%), Positives = 88/197 (44%)
 Frame = -2

Query: 591 GDLLYARRVFHTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 412
           G+L  A ++F  +   N   W  MI G+      + A+ L  QML   I+    T    L
Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSL 249

Query: 411 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 232
            ACA L  LE+ + IH++I K     D                     C+          
Sbjct: 250 SACAGLGALEQGKWIHTYIEKNEIKIDPVLG-----------------CV---------- 282

Query: 231 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 52
               + D YVK  ++E A  +F+++  K V +WT++I G    G  ++A+  F +MQ AG
Sbjct: 283 ----LTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAG 338

Query: 51  VIPDSTVLASILSACAN 1
           + P+S    +IL+AC++
Sbjct: 339 INPNSITFTAILTACSH 355



 Score = 29.3 bits (64), Expect(2) = 1e-15
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 715 LLERCSNM---KELKQIHTHMIKTGLVLDTISASRLL 614
           LL+ CS +   +E +QIH H+IK G  L+  + + LL
Sbjct: 116 LLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLL 152


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