BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031035
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat...    82   2e-27
ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago ...    79   4e-27
ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|2...    83   2e-26
ref|NP_173972.1| pentatricopeptide repeat-containing protein [Ar...    79   2e-24
ref|XP_002893401.1| pentatricopeptide repeat-containing protein ...    78   7e-24

>ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Glycine max]
          Length = 494

 Score = 81.6 bits (200), Expect(2) = 2e-27
 Identities = 39/75 (52%), Positives = 48/75 (64%)
 Frame = -3

Query: 226 FIDFSSFLKLKNKTTSFNKMVDIFGKAKNIELLWKTLEQMGERKLVNDKTFRIGVKYLAE 47
           F+   S     +   SFNKM+D+ GK++NI+L W  L  M  R  VNDKTF I ++ L  
Sbjct: 88  FLYTQSLPHFTHSPVSFNKMLDVVGKSRNIDLFWDLLNDMARRHFVNDKTFVIALRTLGG 147

Query: 46  ARELKKCVEIFHLMN 2
           ARELKKCVE FHLMN
Sbjct: 148 ARELKKCVEFFHLMN 162



 Score = 65.5 bits (158), Expect(2) = 2e-27
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = -2

Query: 335 NATTPKLHIHLRNCKFNLTHEFFLQVCNKFPYSWKPVYRLFQFS 204
           N+  P+L   L + +F LTHEFFLQVCNKFPYSW+PVYR F ++
Sbjct: 48  NSPEPRLTSKLASSEFQLTHEFFLQVCNKFPYSWRPVYRFFLYT 91


>ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
           gi|355515382|gb|AES97005.1| hypothetical protein
           MTR_5g044120 [Medicago truncatula]
          Length = 507

 Score = 79.0 bits (193), Expect(2) = 4e-27
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = -3

Query: 181 SFNKMVDIFGKAKNIELLWKTLEQMGERKLVNDKTFRIGVKYLAEARELKKCVEIFHLMN 2
           SFNKM+D+  K++NI+L W  + +   R LVN+KTF IG+K L  ARELKKCVE FHLMN
Sbjct: 106 SFNKMLDVVAKSRNIDLFWSLVNETARRGLVNNKTFVIGLKTLGGARELKKCVEFFHLMN 165



 Score = 67.4 bits (163), Expect(2) = 4e-27
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = -2

Query: 335 NATTPKLHIHLRNCKFNLTHEFFLQVCNKFPYSWKPVYRLFQFS 204
           N+   +LH  L +  FNLTHEFFLQVCN FPYSW+PVYR F F+
Sbjct: 49  NSPDSRLHSKLTSSNFNLTHEFFLQVCNNFPYSWRPVYRFFLFT 92


>ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|222867489|gb|EEF04620.1|
           predicted protein [Populus trichocarpa]
          Length = 502

 Score = 83.2 bits (204), Expect(2) = 2e-26
 Identities = 37/67 (55%), Positives = 51/67 (76%)
 Frame = -3

Query: 202 KLKNKTTSFNKMVDIFGKAKNIELLWKTLEQMGERKLVNDKTFRIGVKYLAEARELKKCV 23
           +  + + S NKM+DIFG+++N++LLW  +++M +R LVNDKTF I +K LA ARELKKC 
Sbjct: 102 RFTHTSVSLNKMLDIFGRSRNLDLLWGAVQEMAKRGLVNDKTFIIVLKALASARELKKCA 161

Query: 22  EIFHLMN 2
           E FH MN
Sbjct: 162 EFFHFMN 168



 Score = 61.2 bits (147), Expect(2) = 2e-26
 Identities = 26/39 (66%), Positives = 31/39 (79%)
 Frame = -2

Query: 320 KLHIHLRNCKFNLTHEFFLQVCNKFPYSWKPVYRLFQFS 204
           KL   L +  FNLTHEFFLQVCNKFP SW+PV+R FQ++
Sbjct: 57  KLRNKLSSIDFNLTHEFFLQVCNKFPASWRPVHRFFQYT 95


>ref|NP_173972.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75263259|sp|Q9FZD4.1|PPR59_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g26500 gi|9797751|gb|AAF98569.1|AC013427_12
           Contains similarity to a hypothetical protein T12C14_170
           gi|7340718 from Arabidopsis thaliana BAC T12C14
           gb|AL162507 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana] gi|332192576|gb|AEE30697.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 505

 Score = 79.3 bits (194), Expect(2) = 2e-24
 Identities = 36/62 (58%), Positives = 49/62 (79%)
 Frame = -3

Query: 187 TTSFNKMVDIFGKAKNIELLWKTLEQMGERKLVNDKTFRIGVKYLAEARELKKCVEIFHL 8
           +T+ NKM+ I G ++N++L W+  +++G+R LVNDKTFRI +K LA ARELKKCV  FHL
Sbjct: 112 STTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVNYFHL 171

Query: 7   MN 2
           MN
Sbjct: 172 MN 173



 Score = 57.8 bits (138), Expect(2) = 2e-24
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = -2

Query: 335 NATTPKLHIHLRNCKFNLTHEFFLQVCNKFPYSWKPVYRLFQFS 204
           N+   +L   L + KF LTHEFFLQVCN FP SW+PV+R F +S
Sbjct: 58  NSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYS 101


>ref|XP_002893401.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297339243|gb|EFH69660.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 500

 Score = 77.8 bits (190), Expect(2) = 7e-24
 Identities = 35/62 (56%), Positives = 48/62 (77%)
 Frame = -3

Query: 187 TTSFNKMVDIFGKAKNIELLWKTLEQMGERKLVNDKTFRIGVKYLAEARELKKCVEIFHL 8
           +T+ NKM+ I G ++N++L W+  +++G+  LVNDKTFRI +K LA ARELKKCV  FHL
Sbjct: 112 STTSNKMLAIIGNSRNMDLFWELAQEIGKHGLVNDKTFRIVLKTLASARELKKCVNFFHL 171

Query: 7   MN 2
           MN
Sbjct: 172 MN 173



 Score = 57.8 bits (138), Expect(2) = 7e-24
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = -2

Query: 335 NATTPKLHIHLRNCKFNLTHEFFLQVCNKFPYSWKPVYRLFQFS 204
           N+   +L   L + KF LTHEFFLQVCN FP SW+PV+R F +S
Sbjct: 58  NSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYS 101