BLASTX nr result
ID: Coptis25_contig00031032
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00031032
(450 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,... 174 7e-42
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 171 6e-41
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 171 6e-41
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 167 6e-40
ref|NP_196258.1| pentatricopeptide repeat-containing protein [Ar... 158 5e-37
>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1072
Score = 174 bits (441), Expect = 7e-42
Identities = 83/135 (61%), Positives = 104/135 (77%), Gaps = 3/135 (2%)
Frame = -3
Query: 397 SMEDRLEKAGFEFDAEIVEK---RCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAG 227
+ME+RLE GF F+ EIVEK RCFKV A RFF W+K GF HT +TY TM+YIAG
Sbjct: 162 AMEERLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKMRDGFCHTTKTYYTMLYIAG 221
Query: 226 EAKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGT 47
EAKEF V+++LVE MEK SC KDIKTW+ILIS +GKAK I K L+ FE+M+ GCEPD
Sbjct: 222 EAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMKTSGCEPDEK 281
Query: 46 LYEVIVYALCNAGEG 2
+Y+++V++LCNAG+G
Sbjct: 282 IYKMMVHSLCNAGKG 296
Score = 81.3 bits (199), Expect = 8e-14
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Frame = -3
Query: 394 MEDRLEKAGFEFDAEIVEK---RCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 224
M++ LEK +F +V + C G++AL+FF WL + G+ HT+ETYN + I+G
Sbjct: 672 MQEALEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWLGVQTGYCHTKETYNMAMKISGR 731
Query: 223 AKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGTL 44
K+F + L M + C TW I+I YG+ +L F M+ G P+ +
Sbjct: 732 EKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTGLTEISLKTFTEMKDNGYIPNDST 791
Query: 43 YEVIVYALC 17
Y+ ++ +LC
Sbjct: 792 YKYLLISLC 800
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 171 bits (433), Expect = 6e-41
Identities = 80/135 (59%), Positives = 105/135 (77%), Gaps = 3/135 (2%)
Frame = -3
Query: 397 SMEDRLEKAGFEFDAEIVEK---RCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAG 227
SME+RL+K GF+ + EIVEK RC+KV A RFF W+K + GF HT +TYNTM+Y AG
Sbjct: 156 SMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAG 215
Query: 226 EAKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGT 47
EA+EF+V++ L+E MEK SC +DIKTWTILI YGKAK + K L++ E+MRK GCEPD
Sbjct: 216 EAREFSVVDVLLEEMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVE 275
Query: 46 LYEVIVYALCNAGEG 2
+YEV +++LC+AG+G
Sbjct: 276 VYEVTLHSLCDAGKG 290
Score = 81.3 bits (199), Expect = 8e-14
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Frame = -3
Query: 394 MEDRLEKAGFEFDAEIVE---KRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 224
++D LEK +F E+V + C G++AL FF W+ + GF T ETYN + ++G
Sbjct: 649 IQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGR 708
Query: 223 AKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGTL 44
K+F + L M + TW I+I YG+ L +F M+ GC P+ +
Sbjct: 709 GKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDST 768
Query: 43 YEVIVYALC 17
Y+ ++ LC
Sbjct: 769 YKYLIIFLC 777
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 171 bits (433), Expect = 6e-41
Identities = 81/135 (60%), Positives = 105/135 (77%), Gaps = 3/135 (2%)
Frame = -3
Query: 397 SMEDRLEKAGFEFDAEIVEK---RCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAG 227
SME+RL+K GF+ + EIVEK RC+KV A RFF W+K + GF HT +TYNTM+Y AG
Sbjct: 156 SMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAG 215
Query: 226 EAKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGT 47
EA+EF+V++ L+E MEK SC +DIKTWTILI YGKAK I K L++ E+MRK GCEPD
Sbjct: 216 EAREFSVVDVLLEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVE 275
Query: 46 LYEVIVYALCNAGEG 2
+YEV +++LC+AG+G
Sbjct: 276 VYEVTLHSLCDAGKG 290
Score = 81.3 bits (199), Expect = 8e-14
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Frame = -3
Query: 394 MEDRLEKAGFEFDAEIVE---KRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 224
++D LEK +F E+V + C G++AL FF W+ + GF T ETYN + ++G
Sbjct: 649 IQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGR 708
Query: 223 AKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGTL 44
K+F + L M + TW I+I YG+ L +F M+ GC P+ +
Sbjct: 709 GKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDST 768
Query: 43 YEVIVYALC 17
Y+ ++ LC
Sbjct: 769 YKYLIIFLC 777
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 167 bits (424), Expect = 6e-40
Identities = 79/132 (59%), Positives = 100/132 (75%), Gaps = 3/132 (2%)
Frame = -3
Query: 397 SMEDRLEKAGFEFDAEIVEK---RCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAG 227
SME++LEK+GF FD+E+VEK RCFKV ALRFF W+K+ G HT TYNTM+YIAG
Sbjct: 157 SMEEKLEKSGFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAG 216
Query: 226 EAKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGT 47
EAKEF ++E+L+ ME+ C +DIKTWTILIS YGKAK I K L++ E+M K GCEPD
Sbjct: 217 EAKEFGLVEKLIGEMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVA 276
Query: 46 LYEVIVYALCNA 11
Y +++ +LCNA
Sbjct: 277 AYMILIRSLCNA 288
Score = 84.7 bits (208), Expect = 7e-15
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Frame = -3
Query: 394 MEDRLEKAGFEFDAEIVE---KRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 224
+E+ LEK +F +++V + C G +AL FF W+ G+ HT ETYN I I+G
Sbjct: 650 IEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKISGC 709
Query: 223 AKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGTL 44
+K F + L M + P TWTI+I YG+A L F M+ C+P+G+
Sbjct: 710 SKNFRSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRAGLTEIALRNFAEMKANDCKPNGST 769
Query: 43 YEVIVYALC 17
Y+ ++ LC
Sbjct: 770 YKYLIICLC 778
>ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product
[Arabidopsis thaliana] gi|332003627|gb|AED91010.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 1030
Score = 158 bits (399), Expect = 5e-37
Identities = 78/135 (57%), Positives = 97/135 (71%), Gaps = 3/135 (2%)
Frame = -3
Query: 397 SMEDRLEKAGFEFDAEIVE---KRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAG 227
SMEDRLEK F F+ EIVE KRCFKV A+RFF W+K + GF H YNTM+ IAG
Sbjct: 141 SMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAG 200
Query: 226 EAKEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGT 47
EA+ ++++ELV MEK C KDI+TWTILIS YGKAK+I K L++FE+MRK G E D T
Sbjct: 201 EARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDAT 260
Query: 46 LYEVIVYALCNAGEG 2
Y +++ +LC AG G
Sbjct: 261 AYNIMIRSLCIAGRG 275
Score = 75.5 bits (184), Expect = 4e-12
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Frame = -3
Query: 391 EDRLEKAGFEFDAEIVEK--RCFKV-GDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEA 221
++ LEK+ +F E+V + R K+ G++ LRFF W+ G++H E YN I +AG
Sbjct: 632 QEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCG 691
Query: 220 KEFNVIEELVEGMEKASCPKDIKTWTILISSYGKAKRISKTLMLFERMRKCGCEPDGTLY 41
K+F + L M + C TW I+I YG+ + + F+ M+ G P + +
Sbjct: 692 KDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTF 751
Query: 40 EVIVYALC 17
+ ++ LC
Sbjct: 752 KCLITVLC 759