BLASTX nr result
ID: Coptis25_contig00031010
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00031010
(608 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera] 239 4e-61
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ... 147 1e-33
ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi... 142 4e-32
gb|ABR16216.1| unknown [Picea sitchensis] 142 5e-32
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ... 141 8e-32
>emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
Length = 799
Score = 239 bits (609), Expect = 4e-61
Identities = 115/200 (57%), Positives = 147/200 (73%)
Frame = -1
Query: 608 KVFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGG 429
KVF+ M RNLFSWT +IGA S + D K Y KM+ SG+KAD FLYPLV K+CG
Sbjct: 110 KVFEGMDERNLFSWTVMIGACSKNG--DAEKAIELYGKMISSGVKADCFLYPLVLKSCGA 167
Query: 428 MKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTM 249
+K LRRG+ VHG+V+ +G D+V+MNS+IDMY KCE + D+ERVF+E+ VRD+ TWTTM
Sbjct: 168 VKDLRRGQCVHGEVLITGLLGDVVVMNSLIDMYMKCEMVGDSERVFDEMDVRDVITWTTM 227
Query: 248 LTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNGC 69
+ GY+QMG G + LE K M+ S VRP SAT G++P+FSD+G ++AKQIHGLA V G
Sbjct: 228 IVGYMQMGRGLEGLELLKEMLSSQVRPSSATLAGVLPLFSDLGYLKLAKQIHGLAAVTGF 287
Query: 68 NCDKFFGTVLIDMYANCGGL 9
+K GT L+D+YANCGGL
Sbjct: 288 EYEKHVGTALVDVYANCGGL 307
Score = 82.4 bits (202), Expect = 6e-14
Identities = 43/160 (26%), Positives = 79/160 (49%)
Frame = -1
Query: 608 KVFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGG 429
+VFDEM VR++ +WT +I Y ++G ++M+ S ++ + V
Sbjct: 211 RVFDEMDVRDVITWTTMIVGYMQMGRG--LEGLELLKEMLSSQVRPSSATLAGVLPLFSD 268
Query: 428 MKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTM 249
+ L+ +++HG +GFE++ + +++D+YA C L VF+ V +D+ W TM
Sbjct: 269 LGYLKLAKQIHGLAAVTGFEYEKHVGTALVDVYANCGGLYFGRLVFDRVKEKDVSCWNTM 328
Query: 248 LTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFS 129
+ YVQ +A+ K M + P +T+ P +S
Sbjct: 329 IKSYVQANLSDEAISLLKFMHLDGIHPVKSTWYCFFPHYS 368
Score = 73.9 bits (180), Expect = 2e-11
Identities = 40/151 (26%), Positives = 74/151 (49%)
Frame = -1
Query: 458 YPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVC 279
Y + ++C K +GR +H ++ +GFE LVL+N+++ MY+K + +VF +
Sbjct: 57 YLSLIRSCIKFKAFSQGREIHKHMVNAGFEPSLVLLNNIMIMYSKFGDFGETFKVFEGMD 116
Query: 278 VRDIFTWTTMLTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQ 99
R++F+WT M+ + G A+E + M+ S V+ + ++ + +
Sbjct: 117 ERNLFSWTVMIGACSKNGDAEKAIELYGKMISSGVKADCFLYPLVLKSCGAVKDLRRGQC 176
Query: 98 IHGLAIVNGCNCDKFFGTVLIDMYANCGGLG 6
+HG ++ G D LIDMY C +G
Sbjct: 177 VHGEVLITGLLGDVVVMNSLIDMYMKCEMVG 207
>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 620
Score = 147 bits (371), Expect = 1e-33
Identities = 75/199 (37%), Positives = 111/199 (55%)
Frame = -1
Query: 605 VFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGGM 426
+FD++ +NLF W +I Y+ + D Y KM+ G++ DNF P V KAC +
Sbjct: 104 LFDKIPKQNLFLWNVLIRGYAWNGPHD--NAIILYHKMLDYGLRPDNFTLPFVLKACSAL 161
Query: 425 KGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTML 246
+ GR +H VI SG+E DL + ++IDMYAKC + DA RVF+++ VRD W +ML
Sbjct: 162 SAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSML 221
Query: 245 TGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNGCN 66
Y Q G+ +++ + M + VRP AT V +I +D+ C ++IHG +G
Sbjct: 222 AAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQ 281
Query: 65 CDKFFGTVLIDMYANCGGL 9
+ T LIDMYA CG +
Sbjct: 282 SNDKVKTALIDMYAKCGSV 300
Score = 87.4 bits (215), Expect = 2e-15
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 1/201 (0%)
Frame = -1
Query: 608 KVFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGG 429
+VFD++ VR+ W +++ AY+ + D + R+M +G++ V +
Sbjct: 204 RVFDKIVVRDAVLWNSMLAAYAQNGHPD--ESISLCREMAANGVRPTEATLVTVISSSAD 261
Query: 428 MKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTM 249
+ L GR +HG GF+ + + ++IDMYAKC S++ A +F + + + +W +
Sbjct: 262 VACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAI 321
Query: 248 LTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVN-G 72
+TGY G AL+ F M D RP TFVG++ S + + ++ L + + G
Sbjct: 322 ITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYG 380
Query: 71 CNCDKFFGTVLIDMYANCGGL 9
T +ID+ +CG L
Sbjct: 381 ITPTVQHYTCMIDLLGHCGQL 401
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/148 (27%), Positives = 72/148 (48%)
Frame = -1
Query: 458 YPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVC 279
Y + ++C K L G+++H G ++ L ++ +YA SL +A +F+++
Sbjct: 50 YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109
Query: 278 VRDIFTWTTMLTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQ 99
+++F W ++ GY G +A+ + M+ +RP + T ++ S + +
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169
Query: 98 IHGLAIVNGCNCDKFFGTVLIDMYANCG 15
IH I +G D F G LIDMYA CG
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCG 197
>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product
[Vitis vinifera]
Length = 802
Score = 142 bits (359), Expect = 4e-32
Identities = 75/201 (37%), Positives = 111/201 (55%)
Frame = -1
Query: 605 VFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGGM 426
+F+ M + F W +I + ++ + FY +M G++ DNF YP V KACGG+
Sbjct: 82 LFENMRQCDTFIWNVMIRGFVDNGL--FWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGL 139
Query: 425 KGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTML 246
L G RVHG VI SG + D+ + NS+I MYAK +E AE VF E+ VRD+ +W +M+
Sbjct: 140 YDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMI 199
Query: 245 TGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNGCN 66
+GYV +G G +L F+ M S ++ + +GI+ S G K+IH + +
Sbjct: 200 SGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLE 259
Query: 65 CDKFFGTVLIDMYANCGGLGY 3
D T L+DMYA CG + Y
Sbjct: 260 LDVMVQTSLVDMYAKCGRMDY 280
Score = 114 bits (286), Expect = 1e-23
Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 1/200 (0%)
Frame = -1
Query: 605 VFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGGM 426
VF EM VR+L SW ++I Y + D + +R+M SGIK D F + AC
Sbjct: 183 VFREMPVRDLVSWNSMISGYVSVG--DGWRSLSCFREMQASGIKLDRFSVIGILGACSLE 240
Query: 425 KGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTML 246
LR G+ +H ++ S E D+++ S++DMYAKC ++ AER+F+++ + I W M+
Sbjct: 241 GFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMI 300
Query: 245 TGYVQMGYGRDALEFFKVMM-CSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNGC 69
GY ++ + + M + P T + ++P + + + K +HG AI NG
Sbjct: 301 GGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGF 360
Query: 68 NCDKFFGTVLIDMYANCGGL 9
T L+DMY CG L
Sbjct: 361 LPHLVLETALVDMYGECGKL 380
Score = 110 bits (276), Expect = 1e-22
Identities = 56/201 (27%), Positives = 110/201 (54%), Gaps = 1/201 (0%)
Frame = -1
Query: 608 KVFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPL-VFKACG 432
++FD+++ +++ +W A+IG YS N++ + + F + RKM G +++ + + C
Sbjct: 283 RLFDQITDKSIVAWNAMIGGYS-LNAQSF-ESFAYVRKMQEGGKLHPDWITMINLLPPCA 340
Query: 431 GMKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTT 252
++ + G+ VHG I +GF LVL +++DMY +C L+ AE +F ++ R++ +W
Sbjct: 341 QLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNA 400
Query: 251 MLTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNG 72
M+ Y + G R A+ F+ + ++P + T I+P ++++ A+QIHG
Sbjct: 401 MIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLK 460
Query: 71 CNCDKFFGTVLIDMYANCGGL 9
+ + F ++ MY CG L
Sbjct: 461 LDSNTFVSNSIVFMYGKCGNL 481
Score = 85.1 bits (209), Expect = 9e-15
Identities = 42/155 (27%), Positives = 77/155 (49%)
Frame = -1
Query: 605 VFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGGM 426
+F +M+ RNL SW A+I +Y+ + K ++ + +K D + A +
Sbjct: 386 LFGQMNERNLISWNAMIASYTKNGENR--KAMTLFQDLCNKTLKPDATTIASILPAYAEL 443
Query: 425 KGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTML 246
LR ++HG V + + + NS++ MY KC +L A +F+ + +D+ +W T++
Sbjct: 444 ASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVI 503
Query: 245 TGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGII 141
Y G+GR ++E F M P +TFV ++
Sbjct: 504 MAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLL 538
Score = 55.1 bits (131), Expect = 1e-05
Identities = 39/152 (25%), Positives = 67/152 (44%)
Frame = -1
Query: 470 DNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVF 291
D L P +FK R +R ++ E + V + + Y + +++A +F
Sbjct: 35 DLILKPRIFKTA-------RSKRNQSFLV----ERNSVSLTRALSSYVERGYMKNALDLF 83
Query: 290 NEVCVRDIFTWTTMLTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFE 111
+ D F W M+ G+V G DA++F+ M VR + T+ +I +
Sbjct: 84 ENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLA 143
Query: 110 MAKQIHGLAIVNGCNCDKFFGTVLIDMYANCG 15
+++HG I +G + D + G LI MYA G
Sbjct: 144 EGERVHGKVIKSGLDLDIYIGNSLIIMYAKIG 175
>gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 142 bits (358), Expect = 5e-32
Identities = 68/200 (34%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Frame = -1
Query: 602 FDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMV-LSGIKADNFLYPLVFKACGGM 426
FD M+ ++F W +IG Y + Y +M +S DN+ Y V AC +
Sbjct: 69 FDNMTKGDVFPWNVMIGGYVKHGETR--EALELYHQMQKVSSTNPDNYTYSSVLNACARL 126
Query: 425 KGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTML 246
L G+ ++ ++I G E D+++ N++I+M+ KC S+EDA RVF+++C R++ +WT M+
Sbjct: 127 ASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMV 186
Query: 245 TGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNGCN 66
+GY Q G+ +AL F M DV+ T ++P + + + K+IHG I G +
Sbjct: 187 SGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLD 246
Query: 65 CDKFFGTVLIDMYANCGGLG 6
G LIDMYA CG +G
Sbjct: 247 LGIVVGNALIDMYAKCGSIG 266
Score = 123 bits (308), Expect = 3e-26
Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 35/228 (15%)
Frame = -1
Query: 608 KVFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGG 429
+VFD+M RNL SWTA++ Y+ D + R + +M +KA+ V AC
Sbjct: 169 RVFDKMCERNLVSWTAMVSGYAQGGFAD--EALRMFYEMQGEDVKANYVTVASVLPACAQ 226
Query: 428 MKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVR-------- 273
+ L++G+ +HG +I G + +V+ N++IDMYAKC S+ A++VF+++ R
Sbjct: 227 LSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVA 286
Query: 272 ---------------------------DIFTWTTMLTGYVQMGYGRDALEFFKVMMCSDV 174
D+ TW T++T Y Q GYG LE F+ M V
Sbjct: 287 IAGYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGV 346
Query: 173 RPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVNGCNCDKFFGTVLIDM 30
+P S T ++ + + + K+IH L + C D G LIDM
Sbjct: 347 KPNSITIASVLSACAAVSALQEGKRIHDLVNRSECKSDICVGNALIDM 394
Score = 79.0 bits (193), Expect = 6e-13
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = -1
Query: 452 LVFKACGGMKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVR 273
L+ C K L ++VH ++ +G + ++++Y KC SL DA F+ +
Sbjct: 16 LLLHLCTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKG 75
Query: 272 DIFTWTTMLTGYVQMGYGRDALEFFKVMM-CSDVRPQSATFVGIIPVFSDIGCFEMAKQI 96
D+F W M+ GYV+ G R+ALE + M S P + T+ ++ + + K I
Sbjct: 76 DVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLI 135
Query: 95 HGLAIVNGCNCDKFFGTVLIDMYANCGGL 9
+ I GC D LI+M+ CG +
Sbjct: 136 YDEIISKGCEMDVIVENALINMFMKCGSI 164
>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 510
Score = 141 bits (356), Expect = 8e-32
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Frame = -1
Query: 608 KVFDEMSVRNLFSWTAVIGAYSNSNSEDYVKGFRFYRKMVLSGIKADNFLYPLVFKACGG 429
KVFD++S R++F W VI Y+N + + Y M LSG + + YP V KACG
Sbjct: 75 KVFDDLSERDVFCWNNVIKGYANMGP--FAEALHVYNAMRLSGAAPNRYTYPFVLKACGA 132
Query: 428 MKGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKCESLEDAERVFNEVCVRDIFTWTTM 249
+ +GR +HG+V+ G E+DL + N+ + YAKC+ +E + +VF+E+ RDI +W +M
Sbjct: 133 ERDCLKGRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSM 192
Query: 248 LTGYVQMGYGRDALEFFKVMMCSD--VRPQSATFVGIIPVFSDIGCFEMAKQIHGLAIVN 75
++GY+ GY +A+ F M+ D P +AT V ++P F++ IH +
Sbjct: 193 MSGYIANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKT 252
Query: 74 GCNCDKFFGTVLIDMYANCG 15
G D G LI +Y+NCG
Sbjct: 253 GMKLDPAVGCGLITLYSNCG 272
Score = 67.8 bits (164), Expect = 1e-09
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Frame = -1
Query: 425 KGLRRGRRVHGDVICSGFEWDLVLMNSVIDMYAKC--ESLEDAERVFNEVCVRDIFTWTT 252
K + R ++ H +I G + D + +ID Y++ ++E A +VF+++ RD+F W
Sbjct: 31 KTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNN 90
Query: 251 MLTGYVQMGYGRDALEFFKVMMCSDVRPQSATFVGIIPVF-SDIGCFEMAKQIHGLAIVN 75
++ GY MG +AL + M S P T+ ++ ++ C + + IHG +
Sbjct: 91 VIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLK-GRIIHGNVVKC 149
Query: 74 GCNCDKFFGTVLIDMYANC 18
G D F G + YA C
Sbjct: 150 GLEFDLFVGNAFVAFYAKC 168