BLASTX nr result

ID: Coptis25_contig00030996 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030996
         (775 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61930.1| hypothetical protein VITISV_029934 [Vitis vinifera]    70   4e-10
ref|XP_002305059.1| predicted protein [Populus trichocarpa] gi|2...    63   8e-08

>emb|CAN61930.1| hypothetical protein VITISV_029934 [Vitis vinifera]
          Length = 212

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 7/204 (3%)
 Frame = -3

Query: 737 MDGEKVTEDFDNLWFFSNIFXXXXXXXXXXSCTCSDGKITQFHLPELPISKLQIPSAPIP 558
           M+    TE  D+LWFFSN+             + +D K TQ  L   P S+   P + I 
Sbjct: 22  MEDSGFTEKLDSLWFFSNVLSLRSQSMS----SATDEKATQISLHHSPKSEATKPLSIIA 77

Query: 557 QTKRVEALDIKDHVQTSSYLESSMQHVESVEM----ESVKTTEPTKNEQXXXXXXXXXXX 390
           Q ++ +  + +  VQ    L      VE+ +     E ++   P K E+           
Sbjct: 78  QNQKNQTENAEVLVQQRRCLNCGEFAVETEDQIAKTEVLEVLPPVKEEKRRSKRSFKSCL 137

Query: 389 XXXXXXKDQRQQMQFNAFMEFR---DFGFSFVDIELDDELVPMAHMFQRSTVPYYYCKMP 219
                  +QR+++   + ++ +   D GF  V++   + +V  A  +Q    P++  KMP
Sbjct: 138 -------NQRRRVLGESDLQVKGLGDMGFD-VNVVCGNWVVEEASGYQWFGSPHHV-KMP 188

Query: 218 PLDDGLAMKEHLKSWACAVASTVR 147
           PL DG+AMK HLKSWA AVA TVR
Sbjct: 189 PLSDGMAMKHHLKSWAYAVACTVR 212


>ref|XP_002305059.1| predicted protein [Populus trichocarpa] gi|222848023|gb|EEE85570.1|
           predicted protein [Populus trichocarpa]
          Length = 184

 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 52/197 (26%), Positives = 84/197 (42%)
 Frame = -3

Query: 737 MDGEKVTEDFDNLWFFSNIFXXXXXXXXXXSCTCSDGKITQFHLPELPISKLQIPSAPIP 558
           M+G ++ +  ++LWFF+N+           +   S   +T    P L  S      +P P
Sbjct: 1   MEGSQLIQSLESLWFFTNVVSSRASHARNRTIEDSPQPMT----PVLETSLQNHEDSPKP 56

Query: 557 QTKRVEALDIKDHVQTSSYLESSMQHVESVEMESVKTTEPTKNEQXXXXXXXXXXXXXXX 378
           +    + L   D +   + ++       +++ E V+  +PTK E+               
Sbjct: 57  EFFTPKCLKCGDFI---AEIQEHNGDQPNIKTEGVEIPKPTKKEEKRKRRERRRRRSKRK 113

Query: 377 XXKDQRQQMQFNAFMEFRDFGFSFVDIELDDELVPMAHMFQRSTVPYYYCKMPPLDDGLA 198
              +       ++     D+GF       +DE      MF   +   +  KMPPL+DG+A
Sbjct: 114 ILGELGLGFDKSSDYYKLDYGFGM----FNDEEARGYGMF--GSQRQHQVKMPPLNDGMA 167

Query: 197 MKEHLKSWACAVASTVR 147
           MKEHLKSWA  VASTVR
Sbjct: 168 MKEHLKSWAYVVASTVR 184


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