BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030990
         (459 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612651.1| Replication factor A protein [Medicago trunc...    62   4e-08
ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicag...    62   4e-08

>ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
           gi|355513986|gb|AES95609.1| Replication factor A protein
           [Medicago truncatula]
          Length = 477

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
 Frame = -1

Query: 459 VGRIFRWDELRTVTKRNGCKTTVRDIQLQDEHGYVLKITLWSNSAMQLDDETVKNSNAA- 283
           +G I   D +   T  NG K  +  + L D  G VLK+TLW + A   + + +   +A  
Sbjct: 133 IGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHATP 191

Query: 282 ---VLIVTSASVKYKDENAEYVLSSTVATMLYLNLQIPRVADII------NSPIPAPRTL 130
              V I TS  VK    N E  +SS+ +T +Y+N+  P VAD+I      NS +    TL
Sbjct: 192 KPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVADLILSSKGENSVLKTTETL 251

Query: 129 LLPEPPQAPPGITAQRKTLSDIIA-SVNDASSKQMLFTCEATI 4
            L              KT+S++++ +V+      +++ C AT+
Sbjct: 252 SL---------TNVDVKTISELLSMAVSGVYQGDVVYNCVATV 285


>ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
           gi|357477581|ref|XP_003609076.1| Replication factor A 51
           kDa subunit [Medicago truncatula]
           gi|357477673|ref|XP_003609122.1| Replication factor A 51
           kDa subunit [Medicago truncatula]
           gi|355507966|gb|AES89108.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
           gi|355510131|gb|AES91273.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
           gi|355510177|gb|AES91319.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
          Length = 502

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
 Frame = -1

Query: 459 VGRIFRWDELRTVTKRNGCKTTVRDIQLQDEHGYVLKITLWSNSAMQLDDETVKNSNAA- 283
           +G I   D +   T  NG K  +  + L D  G VLK+TLW + A   + + +   +A  
Sbjct: 165 IGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHATP 223

Query: 282 ---VLIVTSASVKYKDENAEYVLSSTVATMLYLNLQIPRVADII------NSPIPAPRTL 130
              V I TS  VK    N E  +SS+ +T +Y+N+  P VAD+I      NS +    TL
Sbjct: 224 KPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVADLILSSKGKNSVLKTTETL 283

Query: 129 LLPEPPQAPPGITAQRKTLSDIIA-SVNDASSKQMLFTCEATI 4
            L              KT+S++++ +V+      +++ C AT+
Sbjct: 284 SL---------TNVDVKTISELLSMAVSGVYQGDVVYNCVATV 317