BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030965
         (535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    69   3e-10
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    69   4e-10
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    69   4e-10
emb|CAN71438.1| hypothetical protein VITISV_011330 [Vitis vinifera]    68   1e-09
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              66   4e-09

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
 Frame = +2

Query: 176  LLMPFSLIKETEKMMRNFCGLEILLIEK---V*WESVCKPVDEGGIGIKRFKHMNLAMLM 346
            +L+P S +   ++  R F     +  +K   + W  +CKP  EGGIG++  + MN A++ 
Sbjct: 671  ILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVA 730

Query: 347  KLGWGILTDVSNDFGRFMRAKYFNADGEIIDYYKP----SSIWSGISKGIEEVVTRS-QW 511
            K+GW +L D  + + R +R KY     +   + KP    SS W  ++ G+ EVV +   W
Sbjct: 731  KVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGW 790

Query: 512  IVGSG 526
            + G G
Sbjct: 791  VPGDG 795


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
 Frame = +2

Query: 176 LLMPFSLIKETEKMMRNFCGLEILLIEK---V*WESVCKPVDEGGIGIKRFKHMNLAMLM 346
           +L+P SL+++ +K+ RNF     +   K   + W+ VC+P   GG+G++  K MN A+L 
Sbjct: 606 ILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLA 665

Query: 347 KLGWGILTDVSNDFGRFMRAKYFNADGEIIDYYKP----SSIWSGISKGIEEVVTRSQWI 514
           K+GW +L D  + + R +R KY   D     +  P    SS W  I  G+ E V +  WI
Sbjct: 666 KVGWRLLNDKVSLWARVLRRKYKVTDVHDSSWLVPKATWSSTWRSIGVGLREGVAKG-WI 724

Query: 515 V 517
           +
Sbjct: 725 L 725


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
 Frame = +2

Query: 176 LLMPFSLIKETEKMMRNFCGLEILLIEK---V*WESVCKPVDEGGIGIKRFKHMNLAMLM 346
           + +P S +   +K+ R+F     +   K   + W+ VCKP  EGG+GI++ + MN A+L 
Sbjct: 333 IALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLS 392

Query: 347 KLGWGILTDVSNDFGRFMRAKYFNADGEIIDYYKP----SSIWSGISKGIEEVVTRS-QW 511
           K+GW ++ D  + + R MR  Y   D     + K     SS W  ++ G+ EVV     W
Sbjct: 393 KVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSW 452

Query: 512 IVGSGEKV 535
           ++G G ++
Sbjct: 453 VIGDGREI 460


>emb|CAN71438.1| hypothetical protein VITISV_011330 [Vitis vinifera]
          Length = 1484

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
 Frame = +2

Query: 179 LMPFSLIKETEKMMRNFC-------GLEILLIEKV*WESVCKPVDEGGIGIKRFKHMNLA 337
           L+P SL +E +KMM +F        G  I  +    W+ +C   +EGG+G +  +  NLA
Sbjct: 329 LLPISLSEELQKMMNSFWWGXKSDGGRRINWLS---WDKLCLRKEEGGLGFRNXRDFNLA 385

Query: 338 MLMKLGWGILTDVSNDFGRFMRAKYFNADGEIIDY---YKPSSIWSGISKGIEEVVTRSQ 508
           ML K GW ++T   +   R ++A+Y+ + G+ +     + PS  W GI      ++  S+
Sbjct: 386 MLGKQGWNLITKPDSLIARLLKARYYRS-GDFLSARLGHNPSFTWKGIWSSRAILLKGSR 444

Query: 509 WIVGSG 526
           W +G G
Sbjct: 445 WRIGDG 450


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
 Frame = +2

Query: 173  VLLMPFSLIKETEKMMRNFC---GLEILLIEKV*WESVCKPVDEGGIGIKRFKHMNLAML 343
            V+ +P S   E +K  RNF          +  V W  +CKP +EGG+G++  +  N A L
Sbjct: 1343 VMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFL 1402

Query: 344  MKLGWGILTDVSNDFGRFMRAKYF-NADGEIIDYYKPSSI-WSGISKGIEEVVTRSQWIV 517
             K+ W I +++   + + +R KY  NAD   +      S  W  I KG + +    +W V
Sbjct: 1403 TKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNV 1462

Query: 518  GSGEKV 535
            G+G K+
Sbjct: 1463 GNGRKI 1468