BLASTX nr result
ID: Coptis25_contig00030944
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00030944
(1755 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 155 4e-35
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 144 7e-32
ref|XP_003598109.1| F-box protein [Medicago truncatula] gi|35548... 136 2e-29
ref|XP_003598113.1| F-box protein [Medicago truncatula] gi|35548... 135 3e-29
ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycin... 134 8e-29
>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
gi|222854763|gb|EEE92310.1| f-box family protein [Populus
trichocarpa]
Length = 396
Score = 155 bits (391), Expect = 4e-35
Identities = 120/355 (33%), Positives = 174/355 (49%), Gaps = 24/355 (6%)
Frame = +2
Query: 305 CRCVSKSWNAIITDPFFVAMHFKQTIENTNNLIKAMFLSWHKLYS--------LDCGTYD 460
CR VSK W A+I P FV +H K +++ ++NL + + H Y DC T
Sbjct: 24 CRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILRTTSHVHYMDFEQNLVLNDCVT-- 81
Query: 461 HKVSEVSHQFQFRRNDSVAFLGSCNGLVCLRSRGMKDMNIYVWNPYKGGQCVQIHITLAH 640
+ E++H N + LGS NGL+C+ S + D I VWNP V + +
Sbjct: 82 --LKELNHPLMCY-NHGIKVLGSVNGLLCI-SNVVDD--IAVWNPSTRKHRVVPFLPIEL 135
Query: 641 Q-----KSKHRVGYGFGYNAIAKDYQVVRVLSYCAGYRCS---EVEVFSLRSMSWRRVQD 796
+ KS +GFGY+++ DY++VR+ + G + S EV+V+SLR SWRR+ D
Sbjct: 136 KRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGD 195
Query: 797 APYNII--PLCGKLVNGALHWTGKHYTKSLYSPNSPMLVLAYDMSRESFREVPMPNYKKI 970
PY + G NGALHW +S N +V+A D+ E +REV P YK
Sbjct: 196 MPYCVHYPGANGVFANGALHWVVGENPES----NVANIVVALDLGVEDYREVLQPEYKDK 251
Query: 971 NFYLE--TLHGYLC--VNFYSHHSFVETWVMKNYGMKESWTKLFRIKKDSTSPVKATYDW 1138
NFY++ L G LC NF V+ W+MK YG+KESWTKLF + + +
Sbjct: 252 NFYIDLGVLRGCLCFLANFLGER--VDVWMMKEYGVKESWTKLFSVAQYEV--IGFLRSL 307
Query: 1139 VPLCFINKGSEVLLTNDGSFYLYDTINNCVQEIMIP--PQEFNGITTYMESNVPV 1297
PL + G EVL+ +D + + + IP P F T++ES + V
Sbjct: 308 KPLAYSKSGDEVLIEHDNLDLCWYDLKRKQVKNRIPGIPYSFEA-DTFVESLISV 361
>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 389
Score = 144 bits (363), Expect = 7e-32
Identities = 104/315 (33%), Positives = 159/315 (50%), Gaps = 13/315 (4%)
Frame = +2
Query: 305 CRCVSKSWNAIITDPFFVAMHFKQTIENTNNLIKAMFLSWHKLYSLDCGTYDHKVSEVSH 484
CRCVSK W +I P F+ +H +IE+ NL ++ L +LYSL D+ + + H
Sbjct: 24 CRCVSKRWRTLIDSPTFIYLHLNHSIESPCNL--SIILKSSELYSLSFDLLDN-IQPLDH 80
Query: 485 QFQFRRNDSVAFLGSCNGLVCLRSRGMKDMNIYVWNPYKGGQCVQIHITLAHQK----SK 652
N V LGSCNGL+C+ + + D +I +WNP V ++ + ++
Sbjct: 81 PLMC-YNHGVKILGSCNGLLCICN--IVD-DIALWNPSIRAHRVVPYLPVELKRYFGMCS 136
Query: 653 HRVG-YGFGYNAIAKDYQVVRVLSYCAGYRC---SEVEVFSLRSMSWRRVQDAPYNII-- 814
RV +GFGY+ DY++VR+ + R SEV+VFSLR SWRR+ D PY ++
Sbjct: 137 CRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYP 196
Query: 815 PLCGKLVNGALHWTGKHYTKSLYSPNSPMLVLAYDMSRESFREVPMPNY--KKINFYLET 988
G NGALHW S + ++A D+ E + VP P + N +
Sbjct: 197 GENGIYANGALHWLVSQDPDSTVADT----IVALDLGVEDYHVVPKPEFVDMNCNMGVGV 252
Query: 989 LHGYLCVNFYSHHSFVETWVMKNYGMKESWTKLFRIKKDSTSPVKATYDWVPLCFINKGS 1168
L G L + Y+ V+ WVM+ Y +KESW+KLF + + + + PL + G+
Sbjct: 253 LQGCLSLLAYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGILRSLK--PLAYSKSGN 310
Query: 1169 EVLLTNDG-SFYLYD 1210
EVL+ +D + + YD
Sbjct: 311 EVLIEHDNVNLFWYD 325
>ref|XP_003598109.1| F-box protein [Medicago truncatula] gi|355487157|gb|AES68360.1| F-box
protein [Medicago truncatula]
Length = 405
Score = 136 bits (342), Expect = 2e-29
Identities = 99/323 (30%), Positives = 160/323 (49%), Gaps = 18/323 (5%)
Frame = +2
Query: 308 RCVSKSWNAIITDPFFVAMHFKQTIENTNNLIKAMFLSWHKLYSLDCGTYDHKVSEVSHQ 487
RC KSW+++I++P F H + + + I + K Y LD Y + + Q
Sbjct: 73 RCACKSWSSLISNPKFAKKHLSMSTRHVLHCISSSGGDILKSYPLD-SIYTNATTTAIPQ 131
Query: 488 FQFR-RNDSVAFLGSCNGLVCLRSRGMKD--MNIYVWNPYKGGQCVQIHITLAHQKSKHR 658
++ S F+GSCNG++CL + G + +WNP+ + ++ Q S +
Sbjct: 132 LEYSVHRCSNYFIGSCNGILCLAAEGYHTNLVTFRLWNPFIR-KFKELPPLGDQQTSAYI 190
Query: 659 VG-YGFGYNAIAKDYQVV---RVLSYCAGY--RCSEVEVFSLRSMSWRRVQDAPYNIIP- 817
+ YGFGY+ ++ +Y+VV RV Y + + EV+V++L SW+ + PY++ P
Sbjct: 191 IKMYGFGYDPVSDNYKVVTVLRVFDYSSHILVKSDEVKVYTLGINSWKSISVFPYSVFPV 250
Query: 818 --LCGKLVNGALHWTGKHYTKSLYSPNSPMLVLAYDMSRESFREVPMPNYKKI---NFYL 982
L GK V+G ++W +K S +L+ D+ ES++EV +PNY K+ NF+L
Sbjct: 251 QQLSGKCVSGTINWLASKDSKQ-----SKYFILSLDLMNESYQEVSLPNYGKVDACNFHL 305
Query: 983 ETLHGYLCVNFYSHHSFVETWVMKNYGMKESWTKLFRIKKDSTSPVKATYDWVPLCFINK 1162
L C+ +S WVMK YG KESWTKLF I + P Y + ++ +
Sbjct: 306 SVLRD--CLIMFSGDV---VWVMKEYGNKESWTKLFTISY-NRDPHTIPYSCMKAIYVFE 359
Query: 1163 GSEVLLTND---GSFYLYDTINN 1222
+VLL G + Y+ NN
Sbjct: 360 DGQVLLNIGGCRGKYIFYNCRNN 382
>ref|XP_003598113.1| F-box protein [Medicago truncatula] gi|355487161|gb|AES68364.1| F-box
protein [Medicago truncatula]
Length = 405
Score = 135 bits (340), Expect = 3e-29
Identities = 99/323 (30%), Positives = 160/323 (49%), Gaps = 18/323 (5%)
Frame = +2
Query: 308 RCVSKSWNAIITDPFFVAMHFKQTIENTNNLIKAMFLSWHKLYSLDCGTYDHKVSEVSHQ 487
RC KSW+++I++P F H + + + I + K Y LD Y + + Q
Sbjct: 73 RCACKSWSSLISNPKFAKKHLSMSTRHVLHCISSSGGDILKSYPLD-SIYTNATTTAIPQ 131
Query: 488 FQFR-RNDSVAFLGSCNGLVCLRSRGMKD--MNIYVWNPYKGGQCVQIHITLAHQKSKHR 658
++ S F+GSCNG++CL + G + +WNP+ + ++ Q S +
Sbjct: 132 LEYSFHRCSNYFIGSCNGILCLAAEGYHTNLVTFRLWNPFIR-KFKELPPLGDQQTSAYI 190
Query: 659 VG-YGFGYNAIAKDYQVV---RVLSYCAGY--RCSEVEVFSLRSMSWRRVQDAPYNIIP- 817
+ YGFGY+ ++ +Y+VV RV Y + + EV+V++L SW+ + PY++ P
Sbjct: 191 IKMYGFGYDPVSDNYKVVTVLRVFDYSSHILVKNDEVKVYTLGINSWKSISVFPYSVFPV 250
Query: 818 --LCGKLVNGALHWTGKHYTKSLYSPNSPMLVLAYDMSRESFREVPMPNYKKI---NFYL 982
L GK V+G ++W +K S +L+ D+ ES++EV +PNY K+ NF+L
Sbjct: 251 QRLSGKCVSGTINWLASKDSKQ-----SKYFILSLDLMNESYQEVSLPNYGKVDACNFHL 305
Query: 983 ETLHGYLCVNFYSHHSFVETWVMKNYGMKESWTKLFRIKKDSTSPVKATYDWVPLCFINK 1162
L C+ +S WVMK YG KESWTKLF I + P Y + ++ +
Sbjct: 306 SVLRD--CLIMFSGDV---VWVMKEYGNKESWTKLFTISY-NRDPHTIPYSCMKAIYVFE 359
Query: 1163 GSEVLLTND---GSFYLYDTINN 1222
+VLL G + Y+ NN
Sbjct: 360 DDQVLLNIGGCRGKYIFYNCRNN 382
>ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max]
gi|255637050|gb|ACU18857.1| unknown [Glycine max]
Length = 406
Score = 134 bits (337), Expect = 8e-29
Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 20/325 (6%)
Frame = +2
Query: 308 RCVSKSWNAIITDPFFVAMHFKQTIENTNN-----LIKAMFLSWHKLYSLDCGTYDHKVS 472
RCV KSW ++I+DP+F+ H + T+ ++ A +H +++ S
Sbjct: 70 RCVCKSWMSLISDPYFMKKHLHLSSRCTHFTHHRIILSATTAEFHLKSCSLSSLFNNPSS 129
Query: 473 EVSHQFQFR-----RNDSVAFLGSCNGLVCLRSRGMKDMNIYVWNPYKGGQCVQIHITLA 637
V + R+D + +GSCNGL+C +G + +WNP +++
Sbjct: 130 TVCDDLNYPVKNKFRHDGI--VGSCNGLLCFAIKGDC---VLLWNP-----SIRVSKKSP 179
Query: 638 HQKSKHRVG----YGFGYNAIAKDYQVVRVLSYCAGYRCS-EVEVFSLRSMSWRRVQDAP 802
+ R G +G GY+ + +DY+VV V + Y +V+V+S+ + SWR++QD P
Sbjct: 180 PLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFCDPSEYFIECKVKVYSMATNSWRKIQDFP 239
Query: 803 YNIIPL--CGKLVNGALHWTGKHYTKSLYSPNSPMLVLAYDMSRESFREVPMPNYKKINF 976
+ +P GK V+G L+W H P+S ++++ D+ +E++REV P+Y+K +
Sbjct: 240 HGFLPFQNSGKFVSGTLNWAANHSI----GPSSFWVIVSLDLHKETYREVLPPDYEKEDC 295
Query: 977 Y---LETLHGYLCVNFYSHHSFVETWVMKNYGMKESWTKLFRIKKDSTSPVKATYDWVPL 1147
L L G LC+N+ + W+MK+YG++ESW KL I P + +
Sbjct: 296 STPSLGVLQGCLCMNYDYKKTHFVVWMMKDYGVRESWVKLVSI---PYVPNPEDFSYSGP 352
Query: 1148 CFINKGSEVLLTNDGSFYLYDTINN 1222
+I++ +VLL + LYD NN
Sbjct: 353 YYISENGKVLLMFEFDLILYDPRNN 377