BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030908
         (781 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...   166   7e-39
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   155   1e-35
gb|EEC77009.1| hypothetical protein OsI_15342 [Oryza sativa Indi...   152   8e-35
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   145   1e-32
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   141   1e-31

>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score =  166 bits (419), Expect = 7e-39
 Identities = 88/239 (36%), Positives = 146/239 (61%), Gaps = 2/239 (0%)
 Frame = -2

Query: 747  DVGYVGNIFTWCNGQEGLSRMYQRLDRVLCNPFWRTNFAEAQVIHISTIHSDHKILLVQL 568
            D+G+ GN FTW  G+   + + +RLDRVLC P  R  + EA V H+    SDH  + +QL
Sbjct: 585  DMGFKGNKFTWKRGRVESTFVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQL 644

Query: 567  HP--KKSKLKRPFRFESMWTTDPTCKEVIKAAMQIEFDGSSSYAFCRNLMLCRRELLKWN 394
             P  + + L+RPFRFE+ W T    K++++A+   E  G +  A    L   + +L KWN
Sbjct: 645  EPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTE--GETPVA----LAALKSKLKKWN 698

Query: 393  QKEFGYLQTQMKEIDNQLKQLQEHNAMCIMPTESSIQKEQELLIQYDHLLQLQEMHWHQK 214
            ++ FG +  + + + N++K +QE   + I  T++ + KE+EL+ ++D +L+ +E+ W QK
Sbjct: 699  REVFGDVNRRKESLMNEIKVVQE--LLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQK 756

Query: 213  SRQDWWKLGEMNTKYFHTLVIKRRHRANISQIKDSNGTTHQQREDIGNCFVNYFSDLFS 37
            SR+ W +LG+ NTKYFHT+ + RR R  I  +K  +G+   Q++++    V+Y+S L+S
Sbjct: 757  SREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRLYS 815


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  155 bits (391), Expect = 1e-35
 Identities = 81/254 (31%), Positives = 135/254 (53%), Gaps = 5/254 (1%)
 Frame = -2

Query: 780 FQEMVYNCGLLDVGYVGNIFTWCNGQEGLSRMYQRLDRVLCNPFWRTNFAEAQVIHISTI 601
           F+  +  C  +D+G+VG  FTW N + G + + +RLDR + N  W+  F  + V H+   
Sbjct: 166 FRNAMEECHFMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPKR 225

Query: 600 HSDHKILLVQLHPKKS-----KLKRPFRFESMWTTDPTCKEVIKAAMQIEFDGSSSYAFC 436
            SDH  ++  +   +S     K  + FRFE+MW  +    EV+K       D   + A  
Sbjct: 226 KSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVKETWMRGTDAGINLART 285

Query: 435 RNLMLCRRELLKWNQKEFGYLQTQMKEIDNQLKQLQEHNAMCIMPTESSIQKEQELLIQY 256
            N      +LL W++++FG++  +++   +Q+K L E       P+E +I   + L  + 
Sbjct: 286 AN------KLLSWSKQKFGHVAKEIRMCQHQMKVLMESE-----PSEDNIMHMRALDARM 334

Query: 255 DHLLQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQIKDSNGTTHQQREDI 76
           D L + +E++WHQ+SRQDW K G+ NTK+FH     R  R N+ +I++  G   +  +D+
Sbjct: 335 DELEKREEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVRRIRNEAGEWFEDEDDV 394

Query: 75  GNCFVNYFSDLFSS 34
             CF +YF +LF S
Sbjct: 395 TECFAHYFENLFQS 408


>gb|EEC77009.1| hypothetical protein OsI_15342 [Oryza sativa Indica Group]
          Length = 815

 Score =  152 bits (384), Expect = 8e-35
 Identities = 89/251 (35%), Positives = 135/251 (53%), Gaps = 1/251 (0%)
 Frame = -2

Query: 780 FQEMVYNCGLLDVGYVGNIFTWCNGQEGLSRMYQRLDRVLCNPFWRTNFAEAQVIHISTI 601
           F+  V N GL+D+GY G  +TW N Q G   + QRLDR L N  W  NF    V H+  +
Sbjct: 27  FKHYVNNIGLMDLGYNGPAYTWSNKQHGKDLVLQRLDRCLANVEWCMNFPNTTVYHLPML 86

Query: 600 HSDHKILLVQLHPKKSKLKRPFRFESMWTTDPTCKEVIKAAMQIEFDGSSSYAFCRNLML 421
           +SDH  ++  L+PK  + +R F+FE+ W  +    +  KAA Q     +  Y F R   L
Sbjct: 87  YSDHAPIIAILNPKSRRPRRSFKFENWWLLESDFNQEAKAAWQ----KTERYHFQRRTTL 142

Query: 420 CRRELLKWNQKEFGYLQTQMKEIDNQLKQLQEHNAMCIMPTESSIQ-KEQELLIQYDHLL 244
             R L  W++K+   LQ Q+ +I+N L ++Q+       P     Q +EQ L  Q+D  +
Sbjct: 143 LARFLTSWSKKK-KPLQQQLDQIENDLLKIQD------SPNRDLYQIEEQRLEQQHDSTM 195

Query: 243 QLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQIKDSNGTTHQQREDIGNCF 64
           Q    ++ Q+S++ W + G+ NT +FH    KRR +  IS I  +N  T+   ++I   F
Sbjct: 196 QKLADYYKQRSKKHWVQQGDRNTSFFHQAAQKRRRKNRISTIIQNNSITNDP-DEIATAF 254

Query: 63  VNYFSDLFSST 31
           ++YFS+LF ST
Sbjct: 255 ISYFSNLFQST 265


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  145 bits (366), Expect = 1e-32
 Identities = 81/249 (32%), Positives = 135/249 (54%)
 Frame = -2

Query: 780  FQEMVYNCGLLDVGYVGNIFTWCNGQEGLSRMYQRLDRVLCNPFWRTNFAEAQVIHISTI 601
            F++ + N  L D+ + G  F+W   + G   + +RLDR L N  W ++    Q++H+  I
Sbjct: 766  FRDFLNNGHLRDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKI 825

Query: 600  HSDHKILLVQLHPKKSKLKRPFRFESMWTTDPTCKEVIKAAMQIEFDGSSSYAFCRNLML 421
             SDH+ LL+  +PK     R FRFE MWTT     +VI+ +    F GS+  ++ RNL+ 
Sbjct: 826  GSDHRPLLLDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLS 885

Query: 420  CRRELLKWNQKEFGYLQTQMKEIDNQLKQLQEHNAMCIMPTESSIQKEQELLIQYDHLLQ 241
            C + L  W++++F     Q+ ++ + +++L + N     P ++  Q    L  Q   L  
Sbjct: 886  CGKALKMWSKEKFSNPSVQVADLLSDIEKLHQSN-----PPDAHHQ-INILTDQVTKLWT 939

Query: 240  LQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQIKDSNGTTHQQREDIGNCFV 61
              EM+WHQ+SR +W KLG+ N+ +FH   I+RR    I ++KD +G       D+   F+
Sbjct: 940  QDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFL 999

Query: 60   NYFSDLFSS 34
            +YF+ L+ S
Sbjct: 1000 DYFTALYQS 1008


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  141 bits (356), Expect = 1e-31
 Identities = 80/251 (31%), Positives = 136/251 (54%), Gaps = 2/251 (0%)
 Frame = -2

Query: 780 FQEMVYNCGLLDVGYVGNIFTWCNGQEGLSRMYQRLDRVLCNPFWRTNFAEAQVIHISTI 601
           F+E++ +C + D+GYVGN FTW  G    + + +RLDR+L N  W  NF   +V+H+   
Sbjct: 161 FREVIDDCAVKDLGYVGNRFTWQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPRY 220

Query: 600 HSDHKILLVQLHPKKS--KLKRPFRFESMWTTDPTCKEVIKAAMQIEFDGSSSYAFCRNL 427
            SDH  LL++     S  +  + F+FE+MW +   C ++++ A    ++GS+       L
Sbjct: 221 RSDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEEA----WNGSAGEDITNRL 276

Query: 426 MLCRRELLKWNQKEFGYLQTQMKEIDNQLKQLQEHNAMCIMPTESSIQKEQELLIQYDHL 247
               R L  W  K FG L+ + KE    L  LQ+ +     P  S++++ + +    D +
Sbjct: 277 DEVSRSLSTWATKTFGNLKKRKKEALTLLNGLQQRD-----PDASTLEQCRIVSGDLDEI 331

Query: 246 LQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQIKDSNGTTHQQREDIGNC 67
            +L+E +WH ++R +  + G+ NTKYFH    +R+ R  I+++ D NG   + RE+I   
Sbjct: 332 HRLEESYWHARARANEIRDGDKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGV 391

Query: 66  FVNYFSDLFSS 34
             +YF  LF++
Sbjct: 392 VQHYFEGLFAT 402