BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030906
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containi...   153   1e-35
ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|2...   151   5e-35
ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containi...   151   6e-35
ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32

>ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 481

 Score =  153 bits (387), Expect = 1e-35
 Identities = 68/102 (66%), Positives = 83/102 (81%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           D+Y KCGCL+ S+K+F  + + +LVTWTT+ISCYG HGKGEESL+LF+KM D GFRPN V
Sbjct: 255 DVYCKCGCLNDSEKIFRTIRHVNLVTWTTMISCYGAHGKGEESLLLFKKMVDEGFRPNPV 314

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLMSSDYSTDPAVEHYACMV 306
           T TA+LASCS SG+IDQG+ IF  + SDY  +P VEHYACMV
Sbjct: 315 TLTAILASCSRSGMIDQGKHIFSSICSDYGFEPTVEHYACMV 356


>ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|222855687|gb|EEE93234.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  151 bits (382), Expect = 5e-35
 Identities = 69/102 (67%), Positives = 84/102 (82%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           DMYA+CGCL+ S+KVF NM   ++VTWTT+ISCYGVHG+ EESL +F+KM+  G +PN V
Sbjct: 252 DMYARCGCLNDSEKVFRNMRSLNVVTWTTMISCYGVHGRAEESLEVFKKMKGFGLKPNPV 311

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLMSSDYSTDPAVEHYACMV 306
           T TAVLASCSHSGLID+GR+IF  M S Y  +P+VEHYACMV
Sbjct: 312 TLTAVLASCSHSGLIDEGRRIFYSMQSHYGFEPSVEHYACMV 353


>ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera] gi|296088567|emb|CBI37558.3| unnamed
           protein product [Vitis vinifera]
          Length = 492

 Score =  151 bits (381), Expect = 6e-35
 Identities = 69/102 (67%), Positives = 83/102 (81%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           DMYAKCGCL  S+KVF  M   +LVTWT++ISCYGVHGKG E+L LF+KM+  GF+PN V
Sbjct: 252 DMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCV 311

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLMSSDYSTDPAVEHYACMV 306
           T TA+LASCSHSGLI+QGRKIF  ++ DY  +P+ EHYACMV
Sbjct: 312 TITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMV 353


>ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Cucumis sativus]
          Length = 472

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/102 (63%), Positives = 80/102 (78%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           DMY+KCG L  S+KVF NM   ++VTWTT+ISCYG HGKGE+SLVLF KM+D G +PNSV
Sbjct: 223 DMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSV 282

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLMSSDYSTDPAVEHYACMV 306
           T TA+LASCSH+G I++G +IF  + SD   +P VEHYAC V
Sbjct: 283 TLTAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHYACAV 324



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           D YAKCG +  ++KVF++M +   V+W ++IS YG  G   ++L  F++M   G   + +
Sbjct: 121 DFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFM 180

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLM--SSDYSTDPAV 285
           T  +VL +C   G + +G++I  L+  S  ++ D AV
Sbjct: 181 TIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAV 217


>ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 502

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/102 (63%), Positives = 80/102 (78%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           DMY+KCG L  S+KVF NM   ++VTWTT+ISCYG HGKGE+SLVLF KM+D G +PNSV
Sbjct: 253 DMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSV 312

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLMSSDYSTDPAVEHYACMV 306
           T TA+LASCSH+G I++G +IF  + SD   +P VEHYAC V
Sbjct: 313 TLTAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHYACAV 354



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +1

Query: 1   DMYAKCGCLDVSQKVFENMPYCSLVTWTTLISCYGVHGKGEESLVLFEKMRDSGFRPNSV 180
           D YAKCG +  ++KVF++M +   V+W ++IS YG  G   ++L  F++M   G   + +
Sbjct: 151 DFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFM 210

Query: 181 TFTAVLASCSHSGLIDQGRKIFDLM--SSDYSTDPAV 285
           T  +VL +C   G + +G++I  L+  S  ++ D AV
Sbjct: 211 TIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAV 247