BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030903
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...   129   2e-28
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   129   2e-28
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   126   2e-27
emb|CAD22561.1| reverse transcriptase [Brassica rapa subsp. rapa]     126   2e-27
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   125   4e-27

>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score =  129 bits (324), Expect = 2e-28
 Identities = 59/117 (50%), Positives = 83/117 (70%)
 Frame = -2

Query: 352 RMRPILQRLISPFHAAFLPGRSVQDNVLLAHEAFHKIRSRSNINSNFFAMKLDMRKAYDK 173
           R++ +L  LIS   +AF+  R + DN+L+A E FH +R+       + A+K DM KAYD+
Sbjct: 105 RLKRLLPELISETQSAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDR 164

Query: 172 LEWNFIRRTLVFFGFSQQWIDRIMFCIRSSSFSILLNGSPFGFFKPSCGMRQGDPIS 2
           +EW+F+R  ++  GF+Q+W+D I+FCI S S+ ILLNGSP GF KPS G+RQGDPIS
Sbjct: 165 VEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPIS 221


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score =  129 bits (324), Expect = 2e-28
 Identities = 59/117 (50%), Positives = 83/117 (70%)
 Frame = -2

Query: 352 RMRPILQRLISPFHAAFLPGRSVQDNVLLAHEAFHKIRSRSNINSNFFAMKLDMRKAYDK 173
           R++ +L  LIS   +AF+  R + DN+L+A E FH +R+       + A+K DM KAYD+
Sbjct: 471 RLKRLLPELISETQSAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDR 530

Query: 172 LEWNFIRRTLVFFGFSQQWIDRIMFCIRSSSFSILLNGSPFGFFKPSCGMRQGDPIS 2
           +EW+F+R  ++  GF+Q+W+D I+FCI S S+ ILLNGSP GF KPS G+RQGDPIS
Sbjct: 531 VEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPIS 587


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  126 bits (317), Expect = 2e-27
 Identities = 54/117 (46%), Positives = 83/117 (70%)
 Frame = -2

Query: 352  RMRPILQRLISPFHAAFLPGRSVQDNVLLAHEAFHKIRSRSNINSNFFAMKLDMRKAYDK 173
            R++  L  +IS   AAF+PG+++ DNVL+AHE  H ++SR    S + A+K D+ KAYD+
Sbjct: 886  RLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDR 945

Query: 172  LEWNFIRRTLVFFGFSQQWIDRIMFCIRSSSFSILLNGSPFGFFKPSCGMRQGDPIS 2
            +EWNF+ + ++  GF+ +W+  IM C+ S S+ +L+NGSP+G   PS G+RQGDP+S
Sbjct: 946  VEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLS 1002


>emb|CAD22561.1| reverse transcriptase [Brassica rapa subsp. rapa]
          Length = 139

 Score =  126 bits (316), Expect = 2e-27
 Identities = 57/117 (48%), Positives = 78/117 (66%)
 Frame = -2

Query: 352 RMRPILQRLISPFHAAFLPGRSVQDNVLLAHEAFHKIRSRSNINSNFFAMKLDMRKAYDK 173
           R++ +L  ++SP   AF+ GR + DNVL+AHE  H +R+     S F A+K DM KAYD+
Sbjct: 23  RLKIVLPHIVSPAQGAFVAGRLISDNVLVAHEMVHGLRTNPLCKSEFIAIKTDMSKAYDR 82

Query: 172 LEWNFIRRTLVFFGFSQQWIDRIMFCIRSSSFSILLNGSPFGFFKPSCGMRQGDPIS 2
           +EW+F+       GF QQWI  IM C+RS SFS+LLNG  +G F+P  G+ QGDP+S
Sbjct: 83  VEWDFLEALFQKLGFHQQWISWIMCCVRSVSFSVLLNGQSYGHFRPKKGISQGDPLS 139


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  125 bits (314), Expect = 4e-27
 Identities = 53/117 (45%), Positives = 83/117 (70%)
 Frame = -2

Query: 352  RMRPILQRLISPFHAAFLPGRSVQDNVLLAHEAFHKIRSRSNINSNFFAMKLDMRKAYDK 173
            R++  L  ++S   AAF+PGR V DNV++AHE  H +++R  ++ ++ A+K D+ KAYD+
Sbjct: 906  RLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDR 965

Query: 172  LEWNFIRRTLVFFGFSQQWIDRIMFCIRSSSFSILLNGSPFGFFKPSCGMRQGDPIS 2
            +EWNF+  T+  FGFS+ WI  IM  ++S ++S+L+NG P G  +P  G+RQGDP+S
Sbjct: 966  VEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLS 1022