BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030854
         (1295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532555.1| conserved hypothetical protein [Ricinus comm...   137   5e-30
dbj|BAD08724.1| F-box protein family-like [Oryza sativa Japonica...   117   5e-24
dbj|BAD08729.1| F-box protein family-like [Oryza sativa Japonica...   112   2e-22
ref|XP_002276543.1| PREDICTED: F-box/kelch-repeat protein At1g57...   112   2e-22
ref|NP_564725.1| F-box protein [Arabidopsis thaliana] gi|7517266...   111   5e-22

>ref|XP_002532555.1| conserved hypothetical protein [Ricinus communis]
            gi|223527710|gb|EEF29816.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 690

 Score =  137 bits (346), Expect = 5e-30
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 2/334 (0%)
 Frame = -2

Query: 1186 IRFRLTCKAWTSITKPVRSYSLLMQSKSDSQQIPWLLSFPKNTKDVCKFSHPIYSDAYTM 1007
            +  R TC  + S+  P++   L +Q+ S S   P L+ F K+  ++C F  P  SD   +
Sbjct: 371  LNLRTTCSLFRSLAPPIQQ-KLCLQNHSSS---PRLMFFEKD--NICTFFEPKNSDKCYL 424

Query: 1006 NIPE-LAGAIVRHANYGWLLMSKGNSSVFFFNPTTMETINLPDYHSEFFRGYRFVNISFS 830
            ++P+ LAG  + ++  GW +MS+G +  + FNP T E +   D  S        + + FS
Sbjct: 425  HLPQQLAGCQICYSKDGWFMMSRGKNFFYCFNPLTGEILKFTDTTSVL--ELELICVGFS 482

Query: 829  SPPTSSDFMVFGHMDSERNCVNMSIYLKQXXXXXXXXXXXRVPYKFMASHCNPVFYNGLF 650
            + PTSSD +    +    N + +    +               + F  +  +PVFYNG+F
Sbjct: 483  TSPTSSDCIAVT-ISKLNNLIEIYFAFRGDTKWVLEQIDDDTDFTFGGN--SPVFYNGVF 539

Query: 649  YCLSKDGKLGIFNPEEEYEDVWKILVRALFPLQNIEYHLTSMRSFLVEYCGEFFSFFV-P 473
            Y L + G L I    ++    W++L     P  +        ++FLVE  G   S FV  
Sbjct: 540  YYLGEKGNLAILEIIDDMV-TWEVLWDLKSPRSHCH------QNFLVECDGNLLSVFVGE 592

Query: 472  VNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVLVPAGLKGVENRIYLPKFYGIDNM 293
                ++VF+L + +  W+RVE+LG+ +  +S ++S    A   G+EN+I+ P+FYG + +
Sbjct: 593  FEGSVEVFRLSQSKMVWIRVENLGNYMVCVSRSSSFSSLAKAPGMENKIFFPRFYGENIV 652

Query: 292  YYSLTTRSFSYFGSKDPCAKWIDSSEIFDCTWFQ 191
            +YSL T  F  F  +    ++  S E   C WF+
Sbjct: 653  FYSLDTNKFHSFDRQKIPIEFYISREQLRCGWFE 686


>dbj|BAD08724.1| F-box protein family-like [Oryza sativa Japonica Group]
            gi|42408294|dbj|BAD09449.1| F-box protein family-like
            [Oryza sativa Japonica Group] gi|125561733|gb|EAZ07181.1|
            hypothetical protein OsI_29426 [Oryza sativa Indica
            Group] gi|125603601|gb|EAZ42926.1| hypothetical protein
            OsJ_27515 [Oryza sativa Japonica Group]
          Length = 712

 Score =  117 bits (294), Expect = 5e-24
 Identities = 103/356 (28%), Positives = 153/356 (42%), Gaps = 19/356 (5%)
 Frame = -2

Query: 1192 DCIRFRLTCKAWTSITKPVRSYSLLMQSKSDSQQIPWLLSFPKNTKDVCKFSHPIYSDAY 1013
            D IRF   CKAW+ +  P+    +           PWL+   K     CK   P+ S+ Y
Sbjct: 381  DRIRFPTVCKAWSEVLNPIEQAKVW----------PWLMHISKQD-GTCKLFDPLRSENY 429

Query: 1012 TMNIPELAGAIVRH----ANYGWLLMSKG--NSSVFFFNPTTMETINLPDYHSEFFRGYR 851
             + +        RH    +  GW+L S G   + +F  NP T E +  P     F   Y 
Sbjct: 430  NIQVTIFDTNEDRHIFRSSKDGWVLASAGIYGNDIFIINPFTEEIVEPPML--AFLYNYN 487

Query: 850  FVNISFSSPPTSSDFMVFGHMDSERNCVNMSIYLKQXXXXXXXXXXXRVPYKFMASHCNP 671
             V+ S SS P   D   FG ++S  +   +S +  Q                F   + NP
Sbjct: 488  GVSFS-SSNPMCLDCAFFG-INSSDSGKFLSTFTWQHGEPHWIEQEFEYNVSFPVGYNNP 545

Query: 670  VFYNGLFYCLSKDGKLGIFNPEEEYEDVWKILVRA--------LFPLQNIEYHLTSMRSF 515
            V ++G FYCL + G LG+F+P     + W+IL +         LF     E H+     +
Sbjct: 546  VMFDGKFYCLGRKGNLGVFDPTS---NTWRILDKPEPIHVEMDLFE----EDHIGREFCY 598

Query: 514  LVEYCGEFFSFFVP-VNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVLVPAGLKGV 338
            LV+  GE  S F+   N+   VFKL+R E  WV VE +G    FL + +S  V +   G 
Sbjct: 599  LVDMDGELISVFLRNANELPRVFKLNRTEISWVEVEDIGGGALFLDYRSSYGVASPDGGN 658

Query: 337  ENRIYLPKFYGIDN--MYYSLTTRSF--SYFGSKDPCAKWIDSSEIFDCTWFQANL 182
             NRIY P+ Y  D   ++Y +  +++  S++G  +P           +C W   NL
Sbjct: 659  GNRIYFPR-YSKDGKPVFYDMNKKTYSPSFYGVIEP----------LNCVWVVPNL 703


>dbj|BAD08729.1| F-box protein family-like [Oryza sativa Japonica Group]
            gi|125603604|gb|EAZ42929.1| hypothetical protein
            OsJ_27518 [Oryza sativa Japonica Group]
          Length = 710

 Score =  112 bits (281), Expect = 2e-22
 Identities = 100/359 (27%), Positives = 147/359 (40%), Gaps = 22/359 (6%)
 Frame = -2

Query: 1192 DCIRFRLTCKAWTSITKPVRSYSLLMQSKSDSQQIPWLLSFPKNTKDVCKFSHPIYSDAY 1013
            D IRF   C AW+ ++ P+    +           PWL+   K    +C+   P+  + Y
Sbjct: 379  DRIRFPTVCMAWSKVSNPIEQAKVW----------PWLMHISKQD-GMCRLFDPLRGEVY 427

Query: 1012 TMNIPELAGAIVRH----ANYGWLLMSKG--NSSVFFFNPTTMETINLPDYHSEFFRGYR 851
             M +        RH    +  GW+  S G     +F  NP T + +  P     F R Y 
Sbjct: 428  NMQVSIFDTNEDRHIFRSSKDGWVFTSAGIYGHDIFIINPFTEDIVEPP----MFERRYH 483

Query: 850  FVNISFSSPPTSSDFMVFGHMDSERNCVNMSIYLKQXXXXXXXXXXXRVPYKFMASHCNP 671
            +  +SFSSP        F  ++S  +   ++I+  +                F   + NP
Sbjct: 484  YNGVSFSSPNPMCPNCYFFGINSSLSGKFLNIHTWRHEETEWIEQRFEYDVPFPVGYNNP 543

Query: 670  VFYNGLFYCLSKDGKLGIFNPEEEYEDVWKILVRA------LFPLQNIEYHLTSMRSFLV 509
            V + G FYCL + G LG F+P     + W+IL +       +  LQN   H      +LV
Sbjct: 544  VMFCGKFYCLGRKGNLGAFDPTS---NTWEILDKPEPIHVEMDLLQND--HRGREFCYLV 598

Query: 508  EYCGEFFSFFVP-VNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVLVPAGLKGVEN 332
            +  GE  S  +   ++   VFKLD  +  WV VE +G    FL H TS  V +   G  N
Sbjct: 599  DLEGELISVLLHNASEAPRVFKLDLTKMSWVEVEDIGGGALFLDHRTSHGVGSPDGGHGN 658

Query: 331  RIYLPK--------FYGIDN-MYYSLTTRSFSYFGSKDPCAKWIDSSEIFDCTWFQANL 182
            RIY P+        FY +DN MYY       S++G  +P           +C W   NL
Sbjct: 659  RIYFPRYSVDRKPVFYDMDNKMYYP------SFYGHIEP----------LNCVWVVPNL 701


>ref|XP_002276543.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Vitis vinifera]
          Length = 376

 Score =  112 bits (281), Expect = 2e-22
 Identities = 101/329 (30%), Positives = 153/329 (46%), Gaps = 14/329 (4%)
 Frame = -2

Query: 1186 IRFRLTCKAWTSITKPVRSYSLLMQSKSDSQQIPWLLSFPKNTKDVCKFSHPIYSDAYTM 1007
            IR    CK W S+    R  +          Q PW++ FPK   D  +F  P+  + Y +
Sbjct: 57   IRASAVCKRWYSVAIATRVVN----------QTPWIMFFPK-VGDTYEFYDPLQRETYCI 105

Query: 1006 NIPELAGAIVRHANYGWLLMSKGNSS-VFFFNPTTMETINLPDYHSEFFRGYRFVNISFS 830
            ++PEL G+ V     GWLL+ +  +  VFFFNP T E+I LP Y       Y+ V++S  
Sbjct: 106  DLPELCGSRVCSTIDGWLLLYRPRTHRVFFFNPFTRESIKLPRYEMS----YQIVSVS-- 159

Query: 829  SPPTSSDFMVFGHMDSERNCVNMSIYLKQXXXXXXXXXXXRVPYKFMASHCNPVFY-NGL 653
            + PTS+  +VF         V +S                R+P  F++S  N + Y NGL
Sbjct: 160  AAPTSASCIVFTIKHISPTVVAISTCHAGATEWTTVNHQNRLP--FVSSIWNKLVYCNGL 217

Query: 652  FYCLSKDGKLGIFNPEEEYEDVWKILVRALFPLQNIEYHLTS---MRSFLVEYCGEFFSF 482
            FYCLS  G LG+F+P++     W +L  ++ P +  E   T       F++E+ GE F  
Sbjct: 218  FYCLSLTGWLGVFDPDDR---SWDVL--SIHPPKCPENFFTKNWWKGKFMLEHQGELFVI 272

Query: 481  FVPVNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVLVPAGLKGV-ENRIYLPK--F 311
            +    +   VFKLDR +  W  +++L     F S  +S      L G+  N ++  K  F
Sbjct: 273  YTCSTENPIVFKLDRNKLVWEEMKTLDGMTIFASFLSS-HGRNDLPGIMRNNVFFSKVRF 331

Query: 310  YGIDNMYYSL------TTRSFSYFGSKDP 242
            YG   + YSL        + +  +G +DP
Sbjct: 332  YGKRCISYSLDDCRYYPRKQYHDWGEQDP 360


>ref|NP_564725.1| F-box protein [Arabidopsis thaliana]
            gi|75172668|sp|Q9FVS1.1|FBK23_ARATH RecName:
            Full=F-box/kelch-repeat protein At1g57790
            gi|11079521|gb|AAG29231.1|AC079732_2 hypothetical protein
            [Arabidopsis thaliana] gi|20466201|gb|AAM20418.1| unknown
            protein [Arabidopsis thaliana] gi|30984578|gb|AAP42752.1|
            At1g57790 [Arabidopsis thaliana]
            gi|332195346|gb|AEE33467.1| F-box protein [Arabidopsis
            thaliana]
          Length = 352

 Score =  111 bits (277), Expect = 5e-22
 Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 6/299 (2%)
 Frame = -2

Query: 1192 DCIRFRLTCKAWTSITKPVRSYSLLMQSKSDSQQIPWLLSFPKNTKDVCKFSHPIYSDAY 1013
            D +R  + CK+W      VR             + PWL+ FP+ TK+   F  P     Y
Sbjct: 32   DNVRASVVCKSWFEAAVSVRVID----------KSPWLMYFPE-TKNTYDFYDPSNCKKY 80

Query: 1012 TMNIPE-LAGAIVRHANYGWLLMSKGNSSVF-FFNPTTMETINLPDYHSEFFRGYRFVNI 839
            TM +P+ L G IVR++  GWLLMS+ +SS F  FNP TM+ + LP  H   F  Y+ V  
Sbjct: 81   TMELPKSLVGFIVRYSKDGWLLMSQEDSSHFVLFNPFTMDVVALPFLH--LFTYYQLVG- 137

Query: 838  SFSSPPTSSDFMVFGHMDSERNCVNMSIYLKQXXXXXXXXXXXRVPYKFM-ASHCNPVFY 662
             FSS PTSS+ +VF   D +   V     ++            +V  +F+   H N VF 
Sbjct: 138  -FSSAPTSSECVVFTIKDYDPGHVT----IRTWSPGQTMWTSMQVESQFLDVDHNNVVFS 192

Query: 661  NGLFYCLSKDGKLGIFNPEEEYEDVWKILVRALFPLQNIEYHLTSMRSFLVEYCGEFFSF 482
            NG+FYCL++   + +F+P       W +L   + P +  +    +   F+V Y G+    
Sbjct: 193  NGVFYCLNQRNHVAVFDPSLR---TWNVL--DVPPPRCPDDKSWNEGKFMVGYKGDILVI 247

Query: 481  FVPVNKPIDVFKLDRLERKWVRVESLGDKVAFLSH---TTSVLVPAGLKGVENRIYLPK 314
                NK   VFKLD     W   ++LG    F+S     +   V  G+  + N +Y P+
Sbjct: 248  RTYENKDPLVFKLDLTRGIWEEKDTLGSLTIFVSRKSCESRTYVKDGM--LRNSVYFPE 304