BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030831
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510983.1| conserved hypothetical protein [Ricinus comm...    64   1e-08
ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|2...    63   2e-08
ref|XP_003598401.1| F-box domain containing protein [Medicago tr...    55   8e-06

>ref|XP_002510983.1| conserved hypothetical protein [Ricinus communis]
           gi|223550098|gb|EEF51585.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 323

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
 Frame = -1

Query: 348 QFYVCNPSTEQYIA----IPNSPQSHVPLDGALCFDP----HFKIVHISGSYPRLNIYSQ 193
           ++ VCNP T+QY++    +P +  + + ++ AL FDP    H+K+V       RL ++S 
Sbjct: 105 EYVVCNPVTKQYVSLKLLVPRNQVTGLLINAALAFDPSISPHYKVVLFDSRNNRLLVFSS 164

Query: 192 ATRKWSVYNLDLDPCVTNSFWSLRYVFLDGLLYKLSMSGHLLIIGL--QQIDS---RAIK 28
            +  W+    +L   ++   W    ++  G +YKLS SGH++   +  +++ S   RAIK
Sbjct: 165 KSWSWNPLKYELQDVLSILRWDKESIYFCGAIYKLSKSGHVVKFSIDEEKVASDRVRAIK 224

Query: 27  LP 22
           LP
Sbjct: 225 LP 226


>ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|222850807|gb|EEE88354.1|
           predicted protein [Populus trichocarpa]
          Length = 396

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
 Frame = -1

Query: 354 SMQFYVCNPSTEQYIAIPNSPQSHVPLDGALCFD----PHFKIV--HISGSYP--RLNIY 199
           ++Q+YVCNP+T+  +AIP        +  AL FD    PH+++V    S S P  RL ++
Sbjct: 138 TLQYYVCNPATKHCVAIPRDFMLENIIFAALAFDPSTSPHYRVVCFDYSESRPPVRLQVF 197

Query: 198 SQATRKWSVYNLDLDPCVTNSFWSLRYVFLDGLLYKLSMSGHLLIIGLQQIDSRAIKLPD 19
           S  T  W+                   ++LDG LY +S S H++   L + +SRAI+LP+
Sbjct: 198 SSETGNWTGNETPFGYSNKKCKVVKHCIYLDGALYCISTSKHIICFDLNRGNSRAIELPE 257


>ref|XP_003598401.1| F-box domain containing protein [Medicago truncatula]
           gi|358348364|ref|XP_003638217.1| F-box domain containing
           protein [Medicago truncatula]
           gi|355487449|gb|AES68652.1| F-box domain containing
           protein [Medicago truncatula]
           gi|355504152|gb|AES85355.1| F-box domain containing
           protein [Medicago truncatula]
          Length = 405

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
 Frame = -1

Query: 345 FYVCNPSTEQYIAI--PNSPQSHVPLDGALCFDP----HFKIVHISGSYPRLNIYSQATR 184
           +YV N  T+Q +A+  PN   S       L +DP     F+IV+  G +  +N++S    
Sbjct: 134 YYVMNHVTKQCVAVSKPNGQISRAYSYATLVYDPTKSRFFQIVNFQG-HRHVNVFSSKNG 192

Query: 183 KWSVYNLDLDPCVTNSFWSLRYVFLDGLLYKLSMSGHLLII 61
            W+   L L   +  S W+ + V+ +G LY+LS SGHL+ I
Sbjct: 193 IWTTQTLILPKYIIASSWTKKSVYFNGSLYRLSRSGHLVKI 233