BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030827
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269519.1| PREDICTED: F-box protein SKIP5 [Vitis vinife...   180   1e-43
ref|XP_002299213.1| f-box family protein [Populus trichocarpa] g...   178   3e-43
ref|XP_002513076.1| conserved hypothetical protein [Ricinus comm...   178   5e-43
ref|XP_003598633.1| F-box protein SKIP5 [Medicago truncatula] gi...   177   8e-43
ref|XP_003598631.1| F-box protein SKIP5 [Medicago truncatula] gi...   177   8e-43

>ref|XP_002269519.1| PREDICTED: F-box protein SKIP5 [Vitis vinifera]
           gi|297742690|emb|CBI35143.3| unnamed protein product
           [Vitis vinifera]
          Length = 254

 Score =  180 bits (456), Expect = 1e-43
 Identities = 86/118 (72%), Positives = 97/118 (82%), Gaps = 4/118 (3%)
 Frame = +2

Query: 77  EEKGRWKKYKSSNSII----HATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLAC 244
           EEK +WK  KSS S I     ++I+NLDDGCLMHIFSFL PIPDRYNTALVC RW YLAC
Sbjct: 2   EEKRKWKHRKSSTSSIPNSNSSSIHNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLAC 61

Query: 245 HPRLWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418
           HPRLWLRV+R++K+  EPGVFP IE A+S ARPGDTILIAAGG++L  NIQI KPLCL
Sbjct: 62  HPRLWLRVDRSVKDSSEPGVFPSIEMAVSAARPGDTILIAAGGSHLASNIQIKKPLCL 119


>ref|XP_002299213.1| f-box family protein [Populus trichocarpa]
           gi|222846471|gb|EEE84018.1| f-box family protein
           [Populus trichocarpa]
          Length = 251

 Score =  178 bits (452), Expect = 3e-43
 Identities = 85/116 (73%), Positives = 93/116 (80%)
 Frame = +2

Query: 71  VEEEKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHP 250
           +EE+  + KK K   S     INNLDDGCLMHIFSFL PIPDRYNTALVC RWCYLACHP
Sbjct: 1   MEEQGKQKKKNKKPLSSSFCPINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWCYLACHP 60

Query: 251 RLWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418
           RLWLRVE++ K+  EPGVFP IE A+S ARPGDTILIAAGG +L  NIQINKPLCL
Sbjct: 61  RLWLRVEQSAKDLSEPGVFPSIEKAVSAARPGDTILIAAGGRHLASNIQINKPLCL 116


>ref|XP_002513076.1| conserved hypothetical protein [Ricinus communis]
           gi|223548087|gb|EEF49579.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 250

 Score =  178 bits (451), Expect = 5e-43
 Identities = 82/113 (72%), Positives = 94/113 (83%)
 Frame = +2

Query: 80  EKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHPRLW 259
           EKG+WK+ K      +  INNLDDGCLMHIFSFL PIPDRYNTALVC RW +LACHPRLW
Sbjct: 5   EKGKWKRKKKEGD--NCRINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHFLACHPRLW 62

Query: 260 LRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418
           LRV+R+IK+  +PGVFP IE A+S ARPGDTILI+AGG++L  NIQINKPLCL
Sbjct: 63  LRVDRSIKDTSQPGVFPSIEMAVSAARPGDTILISAGGSHLASNIQINKPLCL 115


>ref|XP_003598633.1| F-box protein SKIP5 [Medicago truncatula]
           gi|355487681|gb|AES68884.1| F-box protein SKIP5
           [Medicago truncatula]
          Length = 170

 Score =  177 bits (449), Expect = 8e-43
 Identities = 81/115 (70%), Positives = 97/115 (84%)
 Frame = +2

Query: 74  EEEKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHPR 253
           ++ KG+ KK +   +  ++ INNLDDGCLMHIFSFL PIPDR+NTALVC RW YLACHPR
Sbjct: 10  QDNKGQLKKCERKRTSCYSRINNLDDGCLMHIFSFLSPIPDRFNTALVCHRWNYLACHPR 69

Query: 254 LWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418
           LWLRV+R++K+  EPGVFP+IETA+S +RPGDTILIAAGG + V NIQINKPLCL
Sbjct: 70  LWLRVDRSVKDLSEPGVFPNIETAVSASRPGDTILIAAGGIHRVANIQINKPLCL 124


>ref|XP_003598631.1| F-box protein SKIP5 [Medicago truncatula]
           gi|355487679|gb|AES68882.1| F-box protein SKIP5
           [Medicago truncatula]
          Length = 260

 Score =  177 bits (449), Expect = 8e-43
 Identities = 81/115 (70%), Positives = 97/115 (84%)
 Frame = +2

Query: 74  EEEKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHPR 253
           ++ KG+ KK +   +  ++ INNLDDGCLMHIFSFL PIPDR+NTALVC RW YLACHPR
Sbjct: 10  QDNKGQLKKCERKRTSCYSRINNLDDGCLMHIFSFLSPIPDRFNTALVCHRWNYLACHPR 69

Query: 254 LWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418
           LWLRV+R++K+  EPGVFP+IETA+S +RPGDTILIAAGG + V NIQINKPLCL
Sbjct: 70  LWLRVDRSVKDLSEPGVFPNIETAVSASRPGDTILIAAGGIHRVANIQINKPLCL 124