BLASTX nr result
ID: Coptis25_contig00030827
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00030827 (418 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269519.1| PREDICTED: F-box protein SKIP5 [Vitis vinife... 180 1e-43 ref|XP_002299213.1| f-box family protein [Populus trichocarpa] g... 178 3e-43 ref|XP_002513076.1| conserved hypothetical protein [Ricinus comm... 178 5e-43 ref|XP_003598633.1| F-box protein SKIP5 [Medicago truncatula] gi... 177 8e-43 ref|XP_003598631.1| F-box protein SKIP5 [Medicago truncatula] gi... 177 8e-43 >ref|XP_002269519.1| PREDICTED: F-box protein SKIP5 [Vitis vinifera] gi|297742690|emb|CBI35143.3| unnamed protein product [Vitis vinifera] Length = 254 Score = 180 bits (456), Expect = 1e-43 Identities = 86/118 (72%), Positives = 97/118 (82%), Gaps = 4/118 (3%) Frame = +2 Query: 77 EEKGRWKKYKSSNSII----HATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLAC 244 EEK +WK KSS S I ++I+NLDDGCLMHIFSFL PIPDRYNTALVC RW YLAC Sbjct: 2 EEKRKWKHRKSSTSSIPNSNSSSIHNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLAC 61 Query: 245 HPRLWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418 HPRLWLRV+R++K+ EPGVFP IE A+S ARPGDTILIAAGG++L NIQI KPLCL Sbjct: 62 HPRLWLRVDRSVKDSSEPGVFPSIEMAVSAARPGDTILIAAGGSHLASNIQIKKPLCL 119 >ref|XP_002299213.1| f-box family protein [Populus trichocarpa] gi|222846471|gb|EEE84018.1| f-box family protein [Populus trichocarpa] Length = 251 Score = 178 bits (452), Expect = 3e-43 Identities = 85/116 (73%), Positives = 93/116 (80%) Frame = +2 Query: 71 VEEEKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHP 250 +EE+ + KK K S INNLDDGCLMHIFSFL PIPDRYNTALVC RWCYLACHP Sbjct: 1 MEEQGKQKKKNKKPLSSSFCPINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWCYLACHP 60 Query: 251 RLWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418 RLWLRVE++ K+ EPGVFP IE A+S ARPGDTILIAAGG +L NIQINKPLCL Sbjct: 61 RLWLRVEQSAKDLSEPGVFPSIEKAVSAARPGDTILIAAGGRHLASNIQINKPLCL 116 >ref|XP_002513076.1| conserved hypothetical protein [Ricinus communis] gi|223548087|gb|EEF49579.1| conserved hypothetical protein [Ricinus communis] Length = 250 Score = 178 bits (451), Expect = 5e-43 Identities = 82/113 (72%), Positives = 94/113 (83%) Frame = +2 Query: 80 EKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHPRLW 259 EKG+WK+ K + INNLDDGCLMHIFSFL PIPDRYNTALVC RW +LACHPRLW Sbjct: 5 EKGKWKRKKKEGD--NCRINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHFLACHPRLW 62 Query: 260 LRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418 LRV+R+IK+ +PGVFP IE A+S ARPGDTILI+AGG++L NIQINKPLCL Sbjct: 63 LRVDRSIKDTSQPGVFPSIEMAVSAARPGDTILISAGGSHLASNIQINKPLCL 115 >ref|XP_003598633.1| F-box protein SKIP5 [Medicago truncatula] gi|355487681|gb|AES68884.1| F-box protein SKIP5 [Medicago truncatula] Length = 170 Score = 177 bits (449), Expect = 8e-43 Identities = 81/115 (70%), Positives = 97/115 (84%) Frame = +2 Query: 74 EEEKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHPR 253 ++ KG+ KK + + ++ INNLDDGCLMHIFSFL PIPDR+NTALVC RW YLACHPR Sbjct: 10 QDNKGQLKKCERKRTSCYSRINNLDDGCLMHIFSFLSPIPDRFNTALVCHRWNYLACHPR 69 Query: 254 LWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418 LWLRV+R++K+ EPGVFP+IETA+S +RPGDTILIAAGG + V NIQINKPLCL Sbjct: 70 LWLRVDRSVKDLSEPGVFPNIETAVSASRPGDTILIAAGGIHRVANIQINKPLCL 124 >ref|XP_003598631.1| F-box protein SKIP5 [Medicago truncatula] gi|355487679|gb|AES68882.1| F-box protein SKIP5 [Medicago truncatula] Length = 260 Score = 177 bits (449), Expect = 8e-43 Identities = 81/115 (70%), Positives = 97/115 (84%) Frame = +2 Query: 74 EEEKGRWKKYKSSNSIIHATINNLDDGCLMHIFSFLPPIPDRYNTALVCQRWCYLACHPR 253 ++ KG+ KK + + ++ INNLDDGCLMHIFSFL PIPDR+NTALVC RW YLACHPR Sbjct: 10 QDNKGQLKKCERKRTSCYSRINNLDDGCLMHIFSFLSPIPDRFNTALVCHRWNYLACHPR 69 Query: 254 LWLRVERTIKNPREPGVFPDIETAISVARPGDTILIAAGGNYLVCNIQINKPLCL 418 LWLRV+R++K+ EPGVFP+IETA+S +RPGDTILIAAGG + V NIQINKPLCL Sbjct: 70 LWLRVDRSVKDLSEPGVFPNIETAVSASRPGDTILIAAGGIHRVANIQINKPLCL 124