BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030804
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                101   6e-20
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              99   4e-19
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    97   1e-18
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    96   2e-18
gb|AAG50898.1|AC068901_7 hypothetical protein [Arabidopsis thali...    96   3e-18

>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  101 bits (252), Expect = 6e-20
 Identities = 51/116 (43%), Positives = 71/116 (61%)
 Frame = -3

Query: 350  VLWAYRTTPRRST*MSPFSLAYGMEVVLPTEMIAPTVRSQAISTEVNADILARDRAMVAD 171
            VLWAYRTTPRRST  +PFS+ YGME V+P E+  PT++    +   N D+L      + +
Sbjct: 953  VLWAYRTTPRRSTGETPFSMTYGMEAVIPLELGFPTLKFDQYNNVTNHDMLHDSLNTIEE 1012

Query: 170  LRDEALQNLMTYQDSMKRSYDKKLRARAFKPGDWVLRTRQRSNEEPNSGKLGENWE 3
             R+ A   + +YQ  +K++YDK +++R   PGD VLR    +   P  GKLG NWE
Sbjct: 1013 RREVASVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWE 1068


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 350  VLWAYRTTPRRST*MSPFSLAYGMEVVLPTEMIAPTVR--SQAISTEVNADILARDRAMV 177
            VLWAYRTTPRR T  +PFSL YGME V+P E+  P +R     ++ E N+ +L      +
Sbjct: 948  VLWAYRTTPRRPTGETPFSLVYGMEAVVPAELNVPGLRRTEAPLNEEENSAMLNDSLDTI 1007

Query: 176  ADLRDEALQNLMTYQDSMKRSYDKKLRARAFKPGDWVLRTRQRSNEEPNSGKLGENWE 3
             + RD+AL  +  YQ +  R Y+ K+++R F  GD+VLR    + +E  +GKLG NWE
Sbjct: 1008 NERRDQALIRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWE 1065


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 350  VLWAYRTTPRRST*MSPFSLAYGMEVVLPTEMIAPTVRSQAISTE--VNADILARDRAMV 177
            VLW+YRTTPRRST  +PFSL YGME + P E   PTVR   +  +  +N  +L  +   +
Sbjct: 1632 VLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTL 1691

Query: 176  ADLRDEALQNLMTYQDSMKRSYDKKLRARAFKPGDWVLRTRQRSNEEPNSGKLGENWE 3
             + RD+AL  +  YQ +  + Y+KK++ R F  GD VLR    +  E ++GKLG +WE
Sbjct: 1692 EEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWE 1749


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 350  VLWAYRTTPRRST*MSPFSLAYGMEVVLPTEMIAPTVR--SQAISTEVNADILARDRAMV 177
            VLWAYRTTPRRST  +PFSL YGM+ V+P E+  P +R     ++ + N+ +L      +
Sbjct: 1131 VLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTI 1190

Query: 176  ADLRDEALQNLMTYQDSMKRSYDKKLRARAFKPGDWVLRTRQRSNEEPNSGKLGENWE 3
             + RD+AL  +  YQ +  R Y+ K+++R F  GD+VL+    + +E  +GKLG NWE
Sbjct: 1191 NERRDQALIQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWE 1248


>gb|AAG50898.1|AC068901_7 hypothetical protein [Arabidopsis thaliana]
          Length = 243

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
 Frame = -3

Query: 350 VLWAYRTTPRRST*MSPFSLAYGMEVVLPTEMIAPTVRSQA--ISTEVNADILARDRAMV 177
           VLWAYRTTPR+ST  +PFSLAYG+E V+P   I P+VR  A   ++++N  +L  +   +
Sbjct: 128 VLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQMLRDNMDFI 187

Query: 176 ADLRDEALQNLMTYQDSMKRSYDKKLRARAFKPGDWVLRTRQRSNEEPNSGKLGEN 9
            + RD+A+  +  YQ ++ R Y+  ++ R F+ G+ VLR    +  E N+GKLG N
Sbjct: 188 DERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTN 243