BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030803
         (829 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   224   2e-56
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   221   1e-55
ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containi...   201   2e-49
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi...   199   5e-49
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar...   185   1e-44

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
           protein product [Vitis vinifera]
          Length = 878

 Score =  224 bits (570), Expect = 2e-56
 Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 6/205 (2%)
 Frame = +2

Query: 230 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSS------LSNSIPTITHILISSKMFQQLDH 391
           +L KAL+K  + P+LAWHLFK +L+  T SS      +  SIP ITHILI +KM  Q+DH
Sbjct: 6   KLTKALIKNTHNPTLAWHLFKRILSIPTSSSSISSRSILRSIPIITHILIRAKMISQIDH 65

Query: 392 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLES 571
           L  L+L QP ++S++ L  L +  AKSGL + A SQF S RS  P  PP ++LYN++LES
Sbjct: 66  LQQLLLQQPQEVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLES 125

Query: 572 SFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPN 751
           S +E+++D  S LYKDM++A V PETYT NL+I+ L +SGR EDA  +FDKM VKGCRPN
Sbjct: 126 SLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPN 185

Query: 752 VFSFGILIKGYCNAGLGSEALEVFN 826
            FSFGIL++GYC AGL   ALE+ +
Sbjct: 186 EFSFGILVRGYCRAGLSMRALELLD 210



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 46/138 (33%), Positives = 66/138 (47%)
 Frame = +2

Query: 410 LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENR 589
           L P  I Y    T   +  K G ++ A      +      +  S+  YN L+     +N+
Sbjct: 559 LHPDSIIY---DTFIHSFCKHGKISSAFRVLKDMEKRGCNK--SLQTYNSLILGLGSKNQ 613

Query: 590 LDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVFSFGI 769
           +  +  L  DM    + P   T+N MIS L E GR++DAT+L D+M  KG  PN+ SF +
Sbjct: 614 IFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRL 673

Query: 770 LIKGYCNAGLGSEALEVF 823
           LIK +C A       EVF
Sbjct: 674 LIKAFCKASDFGVVKEVF 691



 Score = 62.8 bits (151), Expect = 9e-08
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
 Frame = +2

Query: 449 LTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENRLDCVSRLYKDMLL 628
           L +   ++GL  +AL   D + S F  +P  + +YN L+ S  +E R +   RL + M  
Sbjct: 192 LVRGYCRAGLSMRALELLDGMGS-FGVQPNKV-IYNTLISSFCREGRNEEAERLVERMRE 249

Query: 629 ARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKG----CRPNVFSFGILIKGYCNAG 796
             + P+  TFN  IS L  +G++ +A+ +F  M +       RPN+ +F ++++G+C  G
Sbjct: 250 DGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEG 309

Query: 797 LGSEA 811
           +  EA
Sbjct: 310 MLEEA 314


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  221 bits (564), Expect = 1e-55
 Identities = 116/204 (56%), Positives = 143/204 (70%), Gaps = 2/204 (0%)
 Frame = +2

Query: 224 TMELRKALLKQKNKPSLAWHLFKHLLTSQTPSS-LSNSIPTITHILISSKMFQQLDHLHN 400
           T +L KALL   + P LAWHLFK +L+    S+  S SIP I+ ILI SKMF +LD LH 
Sbjct: 4   TTKLTKALLNNAHNPKLAWHLFKRILSLPISSNHRSQSIPIISRILIRSKMFNELDDLHQ 63

Query: 401 LILLQPP-DISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSF 577
           L+L  P  + S   L  L    AKSG  NKA+S F SLRS+FP + PSI+LYNVLL+S  
Sbjct: 64  LLLNSPSLESSDSSLENLVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCI 123

Query: 578 KENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVF 757
           +ENR++ VS LYKDM+LARV PE YTFNL+I  L +SG LEDA  LFDKMP +GC PN F
Sbjct: 124 RENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEF 183

Query: 758 SFGILIKGYCNAGLGSEALEVFNK 829
           +FGIL++GYC AGL S+ LE+  +
Sbjct: 184 TFGILVRGYCRAGLASKGLELLGQ 207



 Score = 60.5 bits (145), Expect = 5e-07
 Identities = 41/138 (29%), Positives = 66/138 (47%)
 Frame = +2

Query: 410 LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENR 589
           LQP    Y    T   +  + G ++ A      +      +  ++  YN L+     +N+
Sbjct: 555 LQPDSAIY---DTFIHSFCREGKISSAFQVLKDMEKRGCNK--TLQTYNSLILGLGSKNQ 609

Query: 590 LDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVFSFGI 769
           +  +  L  +M    V P+  T+N M++ L E GR+ DA ++ D+M  KG  PN+ SF I
Sbjct: 610 IFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRI 669

Query: 770 LIKGYCNAGLGSEALEVF 823
           LIK +C A     + EVF
Sbjct: 670 LIKAFCKACDFKASHEVF 687



 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 40/153 (26%), Positives = 75/153 (49%)
 Frame = +2

Query: 353 ILISSKMFQQLDHLHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTR 532
           IL +S++F+ +     L L  P  I+Y     +     K G+L +A +  D+++ +    
Sbjct: 268 ILEASRIFRDMQIDEELGLPHPNVITY---KLMLMGFCKEGMLEEAKTLVDTMKRN--AN 322

Query: 533 PPSIHLYNVLLESSFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATN 712
             ++  YN+ L    +  +L     + K+ML   + P+ Y++N+++  L ++G L DA  
Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARM 382

Query: 713 LFDKMPVKGCRPNVFSFGILIKGYCNAGLGSEA 811
           L   M   G  P+  ++  L+ GYC+ G   EA
Sbjct: 383 LMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEA 415


>ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
           gi|449472527|ref|XP_004153621.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  201 bits (510), Expect = 2e-49
 Identities = 104/206 (50%), Positives = 136/206 (66%), Gaps = 6/206 (2%)
 Frame = +2

Query: 230 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSSLS------NSIPTITHILISSKMFQQLDH 391
           +L KA+    N P+LAW LFK +L+S  P+S S       S+P I  ILI++KM  Q+DH
Sbjct: 8   KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67

Query: 392 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLES 571
           LH L+L Q  D ++    +L +  A  GLL  A+SQF SLR  FP  PP I  YN+L   
Sbjct: 68  LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRC 127

Query: 572 SFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPN 751
           S KE+R+DCV  LYKDM +ARV P+TYTFNL+IS L E G LE+A  +FDKM  KGC+PN
Sbjct: 128 SLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187

Query: 752 VFSFGILIKGYCNAGLGSEALEVFNK 829
            FS GIL++GYC AGL S  +++ ++
Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDE 213



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
 Frame = +2

Query: 539 SIHLYNVLLESSFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLF 718
           S+  YN L++    EN++  +  L  +M    + P  YT+N +IS L+E G+L+DAT L 
Sbjct: 598 SLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLL 657

Query: 719 DKMPVKGCRPNVFSFGILIKGY---CNAGLGSEALEV 820
           D+M  KG  PN+++F ILI  +   C+ G   E  E+
Sbjct: 658 DEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEI 694


>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  199 bits (507), Expect = 5e-49
 Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 6/206 (2%)
 Frame = +2

Query: 230 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSSLS------NSIPTITHILISSKMFQQLDH 391
           +L KA+    N P+LAW LFK +L+S  P+S S       S+P I  ILI++KM  Q+DH
Sbjct: 8   KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67

Query: 392 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLES 571
           LH L+L Q  D ++    +L +  A  GLL  A+SQF SLR  FP  PP I  YN+L   
Sbjct: 68  LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRC 127

Query: 572 SFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPN 751
           S KE+R+DCV  LYKDM +A+V P+TYTFNL+IS L E G LE+A  +FDKM  KGC+PN
Sbjct: 128 SLKESRVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187

Query: 752 VFSFGILIKGYCNAGLGSEALEVFNK 829
            FS GIL++GYC AGL S  +++ ++
Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDE 213



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
 Frame = +2

Query: 539 SIHLYNVLLESSFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLF 718
           S+  YN L++    EN++  +  L  +M    + P  YT+N +IS L+E G+L+DAT L 
Sbjct: 598 SLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLL 657

Query: 719 DKMPVKGCRPNVFSFGILIKGY---CNAGLGSEALEV 820
           D+M  KG  PN+++F ILI  +   C+ G   E  E+
Sbjct: 658 DEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEI 694


>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|330251496|gb|AEC06590.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  185 bits (469), Expect = 1e-44
 Identities = 98/204 (48%), Positives = 134/204 (65%), Gaps = 6/204 (2%)
 Frame = +2

Query: 233 LRKALLKQKNKPSLAWHLFKHLLTSQTPSSLSNSI---PTITHILISSKMFQQLDHLHNL 403
           L KALLK  N P LAW +FK + +S +  S   S+   PTI  IL+ +KM +++  LHNL
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64

Query: 404 IL---LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESS 574
           IL   +Q   +S   L ++    AKS  ++KA  QF  +RS FP   PS++LYN+LLES 
Sbjct: 65  ILSSSIQKTKLSS--LLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESC 122

Query: 575 FKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNV 754
            KE R++ VS LYKDM+L  + P+TYTFNL+I  L +S  ++ A  LFD+MP KGC+PN 
Sbjct: 123 IKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNE 182

Query: 755 FSFGILIKGYCNAGLGSEALEVFN 826
           F+FGIL++GYC AGL  + LE+ N
Sbjct: 183 FTFGILVRGYCKAGLTDKGLELLN 206



 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
 Frame = +2

Query: 449 LTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENRLDCVSRLYKDMLL 628
           L +   K+GL +K L   +++ S F   P  + +YN ++ S  +E R D   ++ + M  
Sbjct: 188 LVRGYCKAGLTDKGLELLNAMES-FGVLPNKV-IYNTIVSSFCREGRNDDSEKMVEKMRE 245

Query: 629 ARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGC----RPNVFSFGILIKGYCNAG 796
             ++P+  TFN  IS L + G++ DA+ +F  M +       RPN  ++ +++KG+C  G
Sbjct: 246 EGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVG 305

Query: 797 LGSEALEVF 823
           L  +A  +F
Sbjct: 306 LLEDAKTLF 314



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 42/138 (30%), Positives = 61/138 (44%)
 Frame = +2

Query: 410 LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENR 589
           LQP  ++Y           K     + L   +    H      S+  YN L+     +N+
Sbjct: 555 LQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH-----KSLETYNSLILGLGIKNQ 609

Query: 590 LDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVFSFGI 769
           +  +  L  +M    + P   T+N  I +L E  ++EDATNL D+M  K   PNVFSF  
Sbjct: 610 IFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKY 669

Query: 770 LIKGYCNAGLGSEALEVF 823
           LI+ +C       A EVF
Sbjct: 670 LIEAFCKVPDFDMAQEVF 687