BLASTX nr result
ID: Coptis25_contig00030803
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00030803 (829 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi... 224 2e-56 ref|XP_002527150.1| pentatricopeptide repeat-containing protein,... 221 1e-55 ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containi... 201 2e-49 ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi... 199 5e-49 ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar... 185 1e-44 >ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera] Length = 878 Score = 224 bits (570), Expect = 2e-56 Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 6/205 (2%) Frame = +2 Query: 230 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSS------LSNSIPTITHILISSKMFQQLDH 391 +L KAL+K + P+LAWHLFK +L+ T SS + SIP ITHILI +KM Q+DH Sbjct: 6 KLTKALIKNTHNPTLAWHLFKRILSIPTSSSSISSRSILRSIPIITHILIRAKMISQIDH 65 Query: 392 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLES 571 L L+L QP ++S++ L L + AKSGL + A SQF S RS P PP ++LYN++LES Sbjct: 66 LQQLLLQQPQEVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLES 125 Query: 572 SFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPN 751 S +E+++D S LYKDM++A V PETYT NL+I+ L +SGR EDA +FDKM VKGCRPN Sbjct: 126 SLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPN 185 Query: 752 VFSFGILIKGYCNAGLGSEALEVFN 826 FSFGIL++GYC AGL ALE+ + Sbjct: 186 EFSFGILVRGYCRAGLSMRALELLD 210 Score = 68.9 bits (167), Expect = 1e-09 Identities = 46/138 (33%), Positives = 66/138 (47%) Frame = +2 Query: 410 LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENR 589 L P I Y T + K G ++ A + + S+ YN L+ +N+ Sbjct: 559 LHPDSIIY---DTFIHSFCKHGKISSAFRVLKDMEKRGCNK--SLQTYNSLILGLGSKNQ 613 Query: 590 LDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVFSFGI 769 + + L DM + P T+N MIS L E GR++DAT+L D+M KG PN+ SF + Sbjct: 614 IFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRL 673 Query: 770 LIKGYCNAGLGSEALEVF 823 LIK +C A EVF Sbjct: 674 LIKAFCKASDFGVVKEVF 691 Score = 62.8 bits (151), Expect = 9e-08 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 4/125 (3%) Frame = +2 Query: 449 LTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENRLDCVSRLYKDMLL 628 L + ++GL +AL D + S F +P + +YN L+ S +E R + RL + M Sbjct: 192 LVRGYCRAGLSMRALELLDGMGS-FGVQPNKV-IYNTLISSFCREGRNEEAERLVERMRE 249 Query: 629 ARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKG----CRPNVFSFGILIKGYCNAG 796 + P+ TFN IS L +G++ +A+ +F M + RPN+ +F ++++G+C G Sbjct: 250 DGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEG 309 Query: 797 LGSEA 811 + EA Sbjct: 310 MLEEA 314 >ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 874 Score = 221 bits (564), Expect = 1e-55 Identities = 116/204 (56%), Positives = 143/204 (70%), Gaps = 2/204 (0%) Frame = +2 Query: 224 TMELRKALLKQKNKPSLAWHLFKHLLTSQTPSS-LSNSIPTITHILISSKMFQQLDHLHN 400 T +L KALL + P LAWHLFK +L+ S+ S SIP I+ ILI SKMF +LD LH Sbjct: 4 TTKLTKALLNNAHNPKLAWHLFKRILSLPISSNHRSQSIPIISRILIRSKMFNELDDLHQ 63 Query: 401 LILLQPP-DISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSF 577 L+L P + S L L AKSG NKA+S F SLRS+FP + PSI+LYNVLL+S Sbjct: 64 LLLNSPSLESSDSSLENLVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCI 123 Query: 578 KENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVF 757 +ENR++ VS LYKDM+LARV PE YTFNL+I L +SG LEDA LFDKMP +GC PN F Sbjct: 124 RENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEF 183 Query: 758 SFGILIKGYCNAGLGSEALEVFNK 829 +FGIL++GYC AGL S+ LE+ + Sbjct: 184 TFGILVRGYCRAGLASKGLELLGQ 207 Score = 60.5 bits (145), Expect = 5e-07 Identities = 41/138 (29%), Positives = 66/138 (47%) Frame = +2 Query: 410 LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENR 589 LQP Y T + + G ++ A + + ++ YN L+ +N+ Sbjct: 555 LQPDSAIY---DTFIHSFCREGKISSAFQVLKDMEKRGCNK--TLQTYNSLILGLGSKNQ 609 Query: 590 LDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVFSFGI 769 + + L +M V P+ T+N M++ L E GR+ DA ++ D+M KG PN+ SF I Sbjct: 610 IFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRI 669 Query: 770 LIKGYCNAGLGSEALEVF 823 LIK +C A + EVF Sbjct: 670 LIKAFCKACDFKASHEVF 687 Score = 56.2 bits (134), Expect = 9e-06 Identities = 40/153 (26%), Positives = 75/153 (49%) Frame = +2 Query: 353 ILISSKMFQQLDHLHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTR 532 IL +S++F+ + L L P I+Y + K G+L +A + D+++ + Sbjct: 268 ILEASRIFRDMQIDEELGLPHPNVITY---KLMLMGFCKEGMLEEAKTLVDTMKRN--AN 322 Query: 533 PPSIHLYNVLLESSFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATN 712 ++ YN+ L + +L + K+ML + P+ Y++N+++ L ++G L DA Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARM 382 Query: 713 LFDKMPVKGCRPNVFSFGILIKGYCNAGLGSEA 811 L M G P+ ++ L+ GYC+ G EA Sbjct: 383 LMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEA 415 >ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like [Cucumis sativus] gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like [Cucumis sativus] Length = 875 Score = 201 bits (510), Expect = 2e-49 Identities = 104/206 (50%), Positives = 136/206 (66%), Gaps = 6/206 (2%) Frame = +2 Query: 230 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSSLS------NSIPTITHILISSKMFQQLDH 391 +L KA+ N P+LAW LFK +L+S P+S S S+P I ILI++KM Q+DH Sbjct: 8 KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67 Query: 392 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLES 571 LH L+L Q D ++ +L + A GLL A+SQF SLR FP PP I YN+L Sbjct: 68 LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRC 127 Query: 572 SFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPN 751 S KE+R+DCV LYKDM +ARV P+TYTFNL+IS L E G LE+A +FDKM KGC+PN Sbjct: 128 SLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187 Query: 752 VFSFGILIKGYCNAGLGSEALEVFNK 829 FS GIL++GYC AGL S +++ ++ Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDE 213 Score = 67.8 bits (164), Expect = 3e-09 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Frame = +2 Query: 539 SIHLYNVLLESSFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLF 718 S+ YN L++ EN++ + L +M + P YT+N +IS L+E G+L+DAT L Sbjct: 598 SLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLL 657 Query: 719 DKMPVKGCRPNVFSFGILIKGY---CNAGLGSEALEV 820 D+M KG PN+++F ILI + C+ G E E+ Sbjct: 658 DEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEI 694 >ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like [Cucumis sativus] Length = 875 Score = 199 bits (507), Expect = 5e-49 Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 6/206 (2%) Frame = +2 Query: 230 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSSLS------NSIPTITHILISSKMFQQLDH 391 +L KA+ N P+LAW LFK +L+S P+S S S+P I ILI++KM Q+DH Sbjct: 8 KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67 Query: 392 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLES 571 LH L+L Q D ++ +L + A GLL A+SQF SLR FP PP I YN+L Sbjct: 68 LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRC 127 Query: 572 SFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPN 751 S KE+R+DCV LYKDM +A+V P+TYTFNL+IS L E G LE+A +FDKM KGC+PN Sbjct: 128 SLKESRVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187 Query: 752 VFSFGILIKGYCNAGLGSEALEVFNK 829 FS GIL++GYC AGL S +++ ++ Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDE 213 Score = 67.8 bits (164), Expect = 3e-09 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Frame = +2 Query: 539 SIHLYNVLLESSFKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLF 718 S+ YN L++ EN++ + L +M + P YT+N +IS L+E G+L+DAT L Sbjct: 598 SLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLL 657 Query: 719 DKMPVKGCRPNVFSFGILIKGY---CNAGLGSEALEV 820 D+M KG PN+++F ILI + C+ G E E+ Sbjct: 658 DEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEI 694 >ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana] gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 874 Score = 185 bits (469), Expect = 1e-44 Identities = 98/204 (48%), Positives = 134/204 (65%), Gaps = 6/204 (2%) Frame = +2 Query: 233 LRKALLKQKNKPSLAWHLFKHLLTSQTPSSLSNSI---PTITHILISSKMFQQLDHLHNL 403 L KALLK N P LAW +FK + +S + S S+ PTI IL+ +KM +++ LHNL Sbjct: 5 LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64 Query: 404 IL---LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESS 574 IL +Q +S L ++ AKS ++KA QF +RS FP PS++LYN+LLES Sbjct: 65 ILSSSIQKTKLSS--LLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESC 122 Query: 575 FKENRLDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNV 754 KE R++ VS LYKDM+L + P+TYTFNL+I L +S ++ A LFD+MP KGC+PN Sbjct: 123 IKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNE 182 Query: 755 FSFGILIKGYCNAGLGSEALEVFN 826 F+FGIL++GYC AGL + LE+ N Sbjct: 183 FTFGILVRGYCKAGLTDKGLELLN 206 Score = 64.3 bits (155), Expect = 3e-08 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Frame = +2 Query: 449 LTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENRLDCVSRLYKDMLL 628 L + K+GL +K L +++ S F P + +YN ++ S +E R D ++ + M Sbjct: 188 LVRGYCKAGLTDKGLELLNAMES-FGVLPNKV-IYNTIVSSFCREGRNDDSEKMVEKMRE 245 Query: 629 ARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGC----RPNVFSFGILIKGYCNAG 796 ++P+ TFN IS L + G++ DA+ +F M + RPN ++ +++KG+C G Sbjct: 246 EGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVG 305 Query: 797 LGSEALEVF 823 L +A +F Sbjct: 306 LLEDAKTLF 314 Score = 61.2 bits (147), Expect = 3e-07 Identities = 42/138 (30%), Positives = 61/138 (44%) Frame = +2 Query: 410 LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTRPPSIHLYNVLLESSFKENR 589 LQP ++Y K + L + H S+ YN L+ +N+ Sbjct: 555 LQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH-----KSLETYNSLILGLGIKNQ 609 Query: 590 LDCVSRLYKDMLLARVLPETYTFNLMISFLTESGRLEDATNLFDKMPVKGCRPNVFSFGI 769 + + L +M + P T+N I +L E ++EDATNL D+M K PNVFSF Sbjct: 610 IFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKY 669 Query: 770 LIKGYCNAGLGSEALEVF 823 LI+ +C A EVF Sbjct: 670 LIEAFCKVPDFDMAQEVF 687