BLASTX nr result
ID: Coptis25_contig00030796
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00030796 (951 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2... 511 e-142 ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 509 e-142 ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec... 499 e-139 ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec... 496 e-138 ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation spec... 487 e-135 >ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa] Length = 639 Score = 511 bits (1315), Expect = e-142 Identities = 244/298 (81%), Positives = 274/298 (91%) Frame = +1 Query: 58 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237 IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I + DF S+ C Sbjct: 3 IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDC 62 Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417 +IITHFHLDH+GALPYFTEVCGY+GPIYMTYPTKALAPLMLED+RKV+VDRRGEEEQF+S Sbjct: 63 VIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFTS 122 Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597 +I C++KV AVDL+QTV+VDD+L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMTP Sbjct: 123 LHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182 Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777 DRHLGAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLK VH+CVA GGKVLIPTFAL Sbjct: 183 DRHLGAAQIDR-LELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFAL 241 Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951 GRAQELCILLDDYWERMNL +PIYFSAGLT+QAN+YYK+LI WTSQKVK++YATRNA Sbjct: 242 GRAQELCILLDDYWERMNL-KVPIYFSAGLTIQANLYYKILISWTSQKVKETYATRNA 298 >ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] Length = 963 Score = 509 bits (1312), Expect = e-142 Identities = 242/298 (81%), Positives = 273/298 (91%) Frame = +1 Query: 58 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237 IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I + DF ++ C Sbjct: 3 IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHC 62 Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417 +IITHFHLDH+GALPYFTEVCGY+GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEEQF++ Sbjct: 63 VIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTA 122 Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597 +I CL KV AVDL+QTV+VD +L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMTP Sbjct: 123 DHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182 Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777 DRHLGAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLKVVH+CVA GGKVLIPTFAL Sbjct: 183 DRHLGAAQIDR-LQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFAL 241 Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951 GRAQELC+LLDDYWERMNL +PIYFSAGLT+QANMYYKMLIGWTSQK+K++Y +RNA Sbjct: 242 GRAQELCLLLDDYWERMNL-KVPIYFSAGLTIQANMYYKMLIGWTSQKIKETYTSRNA 298 >ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Cucumis sativus] Length = 649 Score = 499 bits (1285), Expect = e-139 Identities = 235/298 (78%), Positives = 271/298 (90%) Frame = +1 Query: 58 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237 I+CLVLGAGQEVGKSCV+VTI GKRIMFDCGMH+GY+D RRYPDFSRI + D+ ++C Sbjct: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSC 62 Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417 IIITHFHLDHIGALPYFTEVCGY+GPIYMTYPT ALAP+ LEDYRKVMVDRRGE EQF++ Sbjct: 63 IIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTN 122 Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597 +I++CLKKV VDL+QT++VD++L+IR YYAGHV+GAAMFYAKV D+A+VYTGDYNMTP Sbjct: 123 DHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTP 182 Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777 DRHLGAA ID+ + LDL+I+ESTYATT+R+SKYAREREFLK VH C+A+GGKVLIPTFAL Sbjct: 183 DRHLGAAQIDR-MQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFAL 241 Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951 GRAQELC+LLDDYWERMNL PIY SAGLT+QANMYYKMLI WTSQKVK++Y TRNA Sbjct: 242 GRAQELCVLLDDYWERMNL-KFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNA 298 >ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Brachypodium distachyon] Length = 553 Score = 496 bits (1278), Expect = e-138 Identities = 240/301 (79%), Positives = 271/301 (90%), Gaps = 4/301 (1%) Frame = +1 Query: 58 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRI----PNATDFTK 225 IECLVLGAGQEVGKSCV+VTIGGKRIMFDCGMHMGY D RYPDF+RI P TDFT Sbjct: 3 IECLVLGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTS 62 Query: 226 SITCIIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEE 405 +I+C+IITHFHLDHIGALPYFTEVCGY GPIYMTYPTKALAPLMLEDYRKVMVD+RGEEE Sbjct: 63 AISCVIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEE 122 Query: 406 QFSSQNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDY 585 Q+S ++I+ C+KKV VDL+QT++V+ +L IR YYAGHV+GAAM YAKV D+A+VYTGDY Sbjct: 123 QYSYEDILRCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDY 182 Query: 586 NMTPDRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIP 765 NMTPDRHLGAA I++ L LDL+I+ESTYA T+R+SK+AREREFLK VH+CV+ GGKVLIP Sbjct: 183 NMTPDRHLGAAQIER-LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLIP 241 Query: 766 TFALGRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATR 945 TFALGRAQELCILLDDYWERMNL IPIYFSAGLT+QANMYYKMLIGWTSQK+KDSY + Sbjct: 242 TFALGRAQELCILLDDYWERMNL-KIPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQ 300 Query: 946 N 948 N Sbjct: 301 N 301 >ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Glycine max] Length = 516 Score = 487 bits (1253), Expect = e-135 Identities = 234/298 (78%), Positives = 265/298 (88%) Frame = +1 Query: 58 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237 IE LVLGAGQEVGKSCV+VTI KRIMFDCGMHMGYLD RRYPDF+RI + D +++C Sbjct: 3 IETLVLGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSC 62 Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417 IIITHFHLDH+GAL YFTEV GY+GP+YMTYPTKALAPLMLEDYRKVMVDRRGEEE FSS Sbjct: 63 IIITHFHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSS 122 Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597 I +C+KKV AVDLRQTV+V+ +L+IR YYAGHVIGAAMFYAKV D+ +VYTGDYNMTP Sbjct: 123 DQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTP 182 Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777 DRHLGAA ID+ L LDL+I+ESTYATT+R+S+YAREREFLK VH+CV+ GGKVLIPTFAL Sbjct: 183 DRHLGAAQIDR-LRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFAL 241 Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951 GRAQELCILL+DYWERMNL +PIYFSAGLT+QAN YYKMLI WT QK+KD+Y+ NA Sbjct: 242 GRAQELCILLEDYWERMNL-KVPIYFSAGLTIQANAYYKMLIRWTRQKIKDTYSKHNA 298