BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030796
         (951 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   511   e-142
ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   509   e-142
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec...   499   e-139
ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec...   496   e-138
ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation spec...   487   e-135

>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
           predicted protein [Populus trichocarpa]
          Length = 639

 Score =  511 bits (1315), Expect = e-142
 Identities = 244/298 (81%), Positives = 274/298 (91%)
 Frame = +1

Query: 58  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237
           IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I  + DF  S+ C
Sbjct: 3   IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDC 62

Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417
           +IITHFHLDH+GALPYFTEVCGY+GPIYMTYPTKALAPLMLED+RKV+VDRRGEEEQF+S
Sbjct: 63  VIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFTS 122

Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597
            +I  C++KV AVDL+QTV+VDD+L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMTP
Sbjct: 123 LHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182

Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777
           DRHLGAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLK VH+CVA GGKVLIPTFAL
Sbjct: 183 DRHLGAAQIDR-LELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFAL 241

Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951
           GRAQELCILLDDYWERMNL  +PIYFSAGLT+QAN+YYK+LI WTSQKVK++YATRNA
Sbjct: 242 GRAQELCILLDDYWERMNL-KVPIYFSAGLTIQANLYYKILISWTSQKVKETYATRNA 298


>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223534732|gb|EEF36424.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 963

 Score =  509 bits (1312), Expect = e-142
 Identities = 242/298 (81%), Positives = 273/298 (91%)
 Frame = +1

Query: 58  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237
           IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I  + DF  ++ C
Sbjct: 3   IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHC 62

Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417
           +IITHFHLDH+GALPYFTEVCGY+GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEEQF++
Sbjct: 63  VIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTA 122

Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597
            +I  CL KV AVDL+QTV+VD +L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMTP
Sbjct: 123 DHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182

Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777
           DRHLGAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLKVVH+CVA GGKVLIPTFAL
Sbjct: 183 DRHLGAAQIDR-LQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFAL 241

Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951
           GRAQELC+LLDDYWERMNL  +PIYFSAGLT+QANMYYKMLIGWTSQK+K++Y +RNA
Sbjct: 242 GRAQELCLLLDDYWERMNL-KVPIYFSAGLTIQANMYYKMLIGWTSQKIKETYTSRNA 298


>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Cucumis sativus]
          Length = 649

 Score =  499 bits (1285), Expect = e-139
 Identities = 235/298 (78%), Positives = 271/298 (90%)
 Frame = +1

Query: 58  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237
           I+CLVLGAGQEVGKSCV+VTI GKRIMFDCGMH+GY+D RRYPDFSRI  + D+   ++C
Sbjct: 3   IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSC 62

Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417
           IIITHFHLDHIGALPYFTEVCGY+GPIYMTYPT ALAP+ LEDYRKVMVDRRGE EQF++
Sbjct: 63  IIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTN 122

Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597
            +I++CLKKV  VDL+QT++VD++L+IR YYAGHV+GAAMFYAKV D+A+VYTGDYNMTP
Sbjct: 123 DHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTP 182

Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777
           DRHLGAA ID+ + LDL+I+ESTYATT+R+SKYAREREFLK VH C+A+GGKVLIPTFAL
Sbjct: 183 DRHLGAAQIDR-MQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFAL 241

Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951
           GRAQELC+LLDDYWERMNL   PIY SAGLT+QANMYYKMLI WTSQKVK++Y TRNA
Sbjct: 242 GRAQELCVLLDDYWERMNL-KFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNA 298


>ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Brachypodium distachyon]
          Length = 553

 Score =  496 bits (1278), Expect = e-138
 Identities = 240/301 (79%), Positives = 271/301 (90%), Gaps = 4/301 (1%)
 Frame = +1

Query: 58  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRI----PNATDFTK 225
           IECLVLGAGQEVGKSCV+VTIGGKRIMFDCGMHMGY D  RYPDF+RI    P  TDFT 
Sbjct: 3   IECLVLGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTS 62

Query: 226 SITCIIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEE 405
           +I+C+IITHFHLDHIGALPYFTEVCGY GPIYMTYPTKALAPLMLEDYRKVMVD+RGEEE
Sbjct: 63  AISCVIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEE 122

Query: 406 QFSSQNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDY 585
           Q+S ++I+ C+KKV  VDL+QT++V+ +L IR YYAGHV+GAAM YAKV D+A+VYTGDY
Sbjct: 123 QYSYEDILRCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDY 182

Query: 586 NMTPDRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIP 765
           NMTPDRHLGAA I++ L LDL+I+ESTYA T+R+SK+AREREFLK VH+CV+ GGKVLIP
Sbjct: 183 NMTPDRHLGAAQIER-LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLIP 241

Query: 766 TFALGRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATR 945
           TFALGRAQELCILLDDYWERMNL  IPIYFSAGLT+QANMYYKMLIGWTSQK+KDSY  +
Sbjct: 242 TFALGRAQELCILLDDYWERMNL-KIPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQ 300

Query: 946 N 948
           N
Sbjct: 301 N 301


>ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Glycine max]
          Length = 516

 Score =  487 bits (1253), Expect = e-135
 Identities = 234/298 (78%), Positives = 265/298 (88%)
 Frame = +1

Query: 58  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATDFTKSITC 237
           IE LVLGAGQEVGKSCV+VTI  KRIMFDCGMHMGYLD RRYPDF+RI  + D   +++C
Sbjct: 3   IETLVLGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSC 62

Query: 238 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 417
           IIITHFHLDH+GAL YFTEV GY+GP+YMTYPTKALAPLMLEDYRKVMVDRRGEEE FSS
Sbjct: 63  IIITHFHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSS 122

Query: 418 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTP 597
             I +C+KKV AVDLRQTV+V+ +L+IR YYAGHVIGAAMFYAKV D+ +VYTGDYNMTP
Sbjct: 123 DQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTP 182

Query: 598 DRHLGAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFAL 777
           DRHLGAA ID+ L LDL+I+ESTYATT+R+S+YAREREFLK VH+CV+ GGKVLIPTFAL
Sbjct: 183 DRHLGAAQIDR-LRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFAL 241

Query: 778 GRAQELCILLDDYWERMNLNNIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNA 951
           GRAQELCILL+DYWERMNL  +PIYFSAGLT+QAN YYKMLI WT QK+KD+Y+  NA
Sbjct: 242 GRAQELCILLEDYWERMNL-KVPIYFSAGLTIQANAYYKMLIRWTRQKIKDTYSKHNA 298