BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030723
         (672 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271666.1| PREDICTED: photosystem II reaction center PS...   259   4e-67
gb|ABK95843.1| unknown [Populus trichocarpa]                          255   6e-66
ref|XP_003537110.1| PREDICTED: photosystem II reaction center PS...   252   5e-65
ref|XP_002526538.1| Photosystem II reaction center W protein, pu...   251   9e-65
ref|NP_001235805.1| uncharacterized protein LOC100306491 [Glycin...   249   3e-64

>ref|XP_002271666.1| PREDICTED: photosystem II reaction center PSB28 protein,
           chloroplastic [Vitis vinifera]
           gi|297744226|emb|CBI37196.3| unnamed protein product
           [Vitis vinifera]
          Length = 179

 Score =  259 bits (661), Expect = 4e-67
 Identities = 130/182 (71%), Positives = 153/182 (84%)
 Frame = -1

Query: 630 MATMQSLGFSSPVSHRPRQQRSHTGLISSSWLICQSAQSSFNGQLLQLPNPRRVLLRGSS 451
           MA +QSL F+SP+SH  +Q    +GL  SSW + +SA SSFNG+ L LP P+   L+ SS
Sbjct: 1   MAALQSLAFTSPLSHCCKQSPL-SGL--SSWAVHRSAHSSFNGRSLHLPRPQWAALKRSS 57

Query: 450 KMSGAIKMMAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEI 271
             SG I MM KP IQFIQGTDEQT+PDVRLT+SRDGTNG+AIF FE+PSVFDS+GE+G+I
Sbjct: 58  STSGLITMMVKPTIQFIQGTDEQTVPDVRLTQSRDGTNGMAIFKFEQPSVFDSSGEVGDI 117

Query: 270 TGFYMIDEEGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFI 91
           TGFYMIDEEGVLQSVDV+AKFINGKPS IEAKY+MR+PR+WDRFMRFMERYS+ NGLQF+
Sbjct: 118 TGFYMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRSPREWDRFMRFMERYSNENGLQFV 177

Query: 90  KK 85
           KK
Sbjct: 178 KK 179


>gb|ABK95843.1| unknown [Populus trichocarpa]
          Length = 181

 Score =  255 bits (651), Expect = 6e-66
 Identities = 125/183 (68%), Positives = 151/183 (82%), Gaps = 1/183 (0%)
 Frame = -1

Query: 630 MATMQSLGFSSPVS-HRPRQQRSHTGLISSSWLICQSAQSSFNGQLLQLPNPRRVLLRGS 454
           MAT+QSL  +SPV+ H   Q RS +G  S SW + +S+ S FNGQ L LP  R  L+R  
Sbjct: 1   MATLQSLALASPVAQHLQHQTRSFSG--SGSWAVNKSSYSLFNGQSLCLPRLRLPLIRRK 58

Query: 453 SKMSGAIKMMAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGE 274
            + SG + MM KP IQF+QG DEQT+PDVRLTKSRDGTNG+AIFTF++PSVFDS+ E+G+
Sbjct: 59  LRTSGLVTMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEVGD 118

Query: 273 ITGFYMIDEEGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQF 94
           ITGFYMIDEEG+LQSVDVNAKF+NGKP +IEAKYIMRTPR+WDRFMRFME+Y++ANGLQF
Sbjct: 119 ITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMEKYANANGLQF 178

Query: 93  IKK 85
           +KK
Sbjct: 179 VKK 181


>ref|XP_003537110.1| PREDICTED: photosystem II reaction center PSB28 protein,
           chloroplastic-like [Glycine max]
          Length = 179

 Score =  252 bits (643), Expect = 5e-65
 Identities = 128/182 (70%), Positives = 154/182 (84%)
 Frame = -1

Query: 630 MATMQSLGFSSPVSHRPRQQRSHTGLISSSWLICQSAQSSFNGQLLQLPNPRRVLLRGSS 451
           MAT+ SL  SSP+S+    Q+ H+  + SS ++ QS  SSFNGQ L++P  R  +LR S+
Sbjct: 1   MATLHSLALSSPLSNS--LQKPHSYAVPSS-IVHQSTNSSFNGQTLRMPCLRLPVLRQST 57

Query: 450 KMSGAIKMMAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEI 271
            M   + MMAKP IQFIQGTDEQTIPDVRLTKSRDGTNG+AIFTF++PSVFDS+GE+G+I
Sbjct: 58  PMHMPVIMMAKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDI 117

Query: 270 TGFYMIDEEGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFI 91
           TGFYMIDEEGVLQSVDV+AKF+NGKPS IEAKY+MR+PR+WDRFMRFMERYS+ANGLQF+
Sbjct: 118 TGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPREWDRFMRFMERYSNANGLQFV 177

Query: 90  KK 85
           KK
Sbjct: 178 KK 179


>ref|XP_002526538.1| Photosystem II reaction center W protein, putative [Ricinus
           communis] gi|223534099|gb|EEF35816.1| Photosystem II
           reaction center W protein, putative [Ricinus communis]
          Length = 178

 Score =  251 bits (641), Expect = 9e-65
 Identities = 127/181 (70%), Positives = 151/181 (83%)
 Frame = -1

Query: 630 MATMQSLGFSSPVSHRPRQQRSHTGLISSSWLICQSAQSSFNGQLLQLPNPRRVLLRGSS 451
           MAT+QSL F+SPVSH   Q RS  G  S  W + + A+S F+G+ L+L +P+    R   
Sbjct: 1   MATLQSLAFASPVSHYSHQTRSFPG--SFCWAVHRIARSPFSGKSLRLSHPQLTSTR--Q 56

Query: 450 KMSGAIKMMAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEI 271
           K S  I MMAKP IQFIQGTDEQTIPDVRLTKSRDGTNG+AIFTF+EPSVFDS+ ELG+I
Sbjct: 57  KSSRFITMMAKPSIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDEPSVFDSSAELGDI 116

Query: 270 TGFYMIDEEGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFI 91
           TGFYMIDEEGVLQSVDV+AKF+NGKP++IEAKY+MR+PR+WDRFMRFMERY++ANGLQF+
Sbjct: 117 TGFYMIDEEGVLQSVDVSAKFVNGKPARIEAKYVMRSPREWDRFMRFMERYANANGLQFV 176

Query: 90  K 88
           K
Sbjct: 177 K 177


>ref|NP_001235805.1| uncharacterized protein LOC100306491 [Glycine max]
           gi|255628701|gb|ACU14695.1| unknown [Glycine max]
          Length = 179

 Score =  249 bits (637), Expect = 3e-64
 Identities = 129/182 (70%), Positives = 152/182 (83%)
 Frame = -1

Query: 630 MATMQSLGFSSPVSHRPRQQRSHTGLISSSWLICQSAQSSFNGQLLQLPNPRRVLLRGSS 451
           MAT+ SL  SSP+S+  ++ RS    + SS ++ QS  SSFNGQ L LP  R  +LR ++
Sbjct: 1   MATLHSLALSSPLSNSLQKPRSCA--VPSS-IVHQSTNSSFNGQTLHLPCLRLPVLRQNT 57

Query: 450 KMSGAIKMMAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEI 271
            M   + MM KP IQFIQGTDEQTIPDVRLTKSRDGTNG+AIFTF++PSVFDS+GE+G+I
Sbjct: 58  PMHMPVIMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDI 117

Query: 270 TGFYMIDEEGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFI 91
           TGFYMIDEEGVLQSVDV+AKF+NGKPS IEAKY+MR+PRDWDRFMRFMERYS+ANGLQFI
Sbjct: 118 TGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPRDWDRFMRFMERYSNANGLQFI 177

Query: 90  KK 85
           KK
Sbjct: 178 KK 179