BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030716
         (766 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|2...   164   1e-38
ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containi...   155   1e-35
ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containi...   155   1e-35
ref|XP_003606459.1| Pentatricopeptide repeat-containing protein ...   136   6e-30
ref|NP_180348.2| pentatricopeptide repeat-containing protein [Ar...   129   9e-28

>ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|222865910|gb|EEF03041.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score =  164 bits (416), Expect = 1e-38
 Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 10/222 (4%)
 Frame = +1

Query: 130 VLVNMISAIRKHLAPHCTKFPFQILPTPLPVSVSTYPVTVFKKRDIETVR---------- 279
           + ++  S I    + +  KFPF IL T   V  S    T  K +D++ +           
Sbjct: 21  IFISPPSCINTFHSKNLAKFPFPIL-TQYSVISSYLNPTARKLKDVDLLAQTQILPSSNF 79

Query: 280 STFYNTNLYLCTFNRYLSTXXXXXXXXXXXXXXXXXXXXNKVAEFERAAAQLPLRFIAED 459
           STFY+T     +F +  +                        A+F+R+ +QLP RF  E+
Sbjct: 80  STFYSTKAPSRSFRKRNNKRAKANSRPILDE-----------AKFQRSVSQLPSRFTNEE 128

Query: 460 LYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGSAELYEEMDGVVNQVLAV 639
           L   + L DD LVCLELFN+ASQQ RFRHD STYH+TIKKLG A++Y+EMD VVNQ+LAV
Sbjct: 129 LCNNITLEDDPLVCLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAV 188

Query: 640 PAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRP 765
           P IG+EAL+N++IY++TEARKL++A++++K M+ S +  CRP
Sbjct: 189 PHIGNEALYNSIIYYFTEARKLTRAVNIFKRMKSSRNLDCRP 230


>ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
           mitochondrial-like [Cucumis sativus]
          Length = 428

 Score =  155 bits (391), Expect = 1e-35
 Identities = 70/119 (58%), Positives = 98/119 (82%)
 Frame = +1

Query: 409 EFERAAAQLPLRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGS 588
           +F+ A +++P RF +E+L  +++L  D LVC ELFN+ASQQPRFRHD S+Y +TIKKLG 
Sbjct: 106 QFQLAVSKIPPRFTSEELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGE 165

Query: 589 AELYEEMDGVVNQVLAVPAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRP 765
           A++YEEMD VVNQ LAV +IGSE L+NT+IYF+TEARKL++A++++KHM+ + +  CRP
Sbjct: 166 AKMYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRP 224


>ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
           mitochondrial-like [Cucumis sativus]
          Length = 428

 Score =  155 bits (391), Expect = 1e-35
 Identities = 70/119 (58%), Positives = 98/119 (82%)
 Frame = +1

Query: 409 EFERAAAQLPLRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGS 588
           +F+ A +++P RF +E+L  +++L  D LVC ELFN+ASQQPRFRHD S+Y +TIKKLG 
Sbjct: 106 QFQLAVSKIPPRFTSEELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGE 165

Query: 589 AELYEEMDGVVNQVLAVPAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRP 765
           A++YEEMD VVNQ LAV +IGSE L+NT+IYF+TEARKL++A++++KHM+ + +  CRP
Sbjct: 166 AKMYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRP 224


>ref|XP_003606459.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355507514|gb|AES88656.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score =  136 bits (342), Expect = 6e-30
 Identities = 68/121 (56%), Positives = 95/121 (78%), Gaps = 2/121 (1%)
 Frame = +1

Query: 409 EFERAAAQLPLRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGS 588
           +F+ A +QL  RF  E+L  ++    D LVCLELF++AS QPRFRH+ S++H+TIKKLG 
Sbjct: 83  KFQFAQSQLLPRFTPEELRNVIANQRDPLVCLELFHWASHQPRFRHNESSFHVTIKKLGD 142

Query: 589 AELYEEMDGVVNQVLAVPAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDE--GCR 762
           A++Y+EMD VVNQ+LAV +IG+EALFN +IY++TEARKL++A+ V+KHM+ S +   G R
Sbjct: 143 AKMYQEMDDVVNQLLAVRSIGNEALFNMIIYYFTEARKLTRAVIVFKHMKCSRNPNFGFR 202

Query: 763 P 765
           P
Sbjct: 203 P 203


>ref|NP_180348.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546772|sp|Q9ZUY1.2|PP173_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g27800, mitochondrial; Flags: Precursor
           gi|330252952|gb|AEC08046.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 442

 Score =  129 bits (323), Expect = 9e-28
 Identities = 56/121 (46%), Positives = 90/121 (74%)
 Frame = +1

Query: 403 VAEFERAAAQLPLRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKL 582
           V++F    ++LP RF  E+L   + L +D  +C  LFN+ASQQPRF H+  +YH+ I+KL
Sbjct: 123 VSKFHETISKLPPRFTPEELADAITLEEDPFLCFHLFNWASQQPRFTHENCSYHIAIRKL 182

Query: 583 GSAELYEEMDGVVNQVLAVPAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCR 762
           G+A++Y+EMD +VNQVL+V  IG+E L+N++I+++T+A KL +A+++++HM  S +  CR
Sbjct: 183 GAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECR 242

Query: 763 P 765
           P
Sbjct: 243 P 243