BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030660
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 72   6e-11
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               71   8e-11
emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]    69   4e-10
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                 65   8e-09
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                   64   1e-08

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
 Frame = +3

Query: 108 EQFFQGKSDKGLYPFLFSCHT-----SSSPSALLSNKASFSNWHQRLGHSSSRILHQVLS 272
           +  FQG S+ GLYPF ++        + SP+AL+  KA    WH+RLGH S   LH V+ 
Sbjct: 690 KMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMIAKADIHTWHRRLGHPSGGTLHSVVH 749

Query: 273 RNKLVVQHSTQSSSFCKDCQLGKRHKLS 356
           +N L V     + S C  CQLGK ++LS
Sbjct: 750 KNHLPVIGYVNNMSVCTACQLGKSYRLS 777


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
 Frame = +3

Query: 108 EQFFQGKSDKGLYPFLFSCHTS--SSPSALLSNKASFSNWHQRLGHSSSRILHQVLSRNK 281
           +  + GKS+ GLYPF F   TS  SS  A +S++ S   WH RLGH+SS I+ +VLS NK
Sbjct: 448 KMLYHGKSENGLYPFRFPSKTSKVSSSLAYVSSRVSAETWHSRLGHASSTIVSKVLS-NK 506

Query: 282 LVVQHSTQSSSFCKDCQLGKRHKLSSPV 365
            V    + + SFC+ C LGK  +  S +
Sbjct: 507 AVPVLGSSNFSFCQSCPLGKSGEYKSHI 534


>emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]
          Length = 879

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
 Frame = +3

Query: 120 QGKSDKGLYPFLF---SCHTSSSPSALLSNKASFSNWHQRLGHSSSRILHQVLSRNKLVV 290
           +GKS+ GLYP      S + S + SA++  KAS S WH RLGH+S  I+ Q+L+++ L V
Sbjct: 244 EGKSEGGLYPIQLXSMSINKSHALSAVVGIKASVSIWHSRLGHASLPIVSQLLNKHSLPV 303

Query: 291 QHSTQSSSFCKDCQLGK------RHKLSSPVSVSKTTCPSYI 398
           + S     FC+ CQLGK         L  P S   +T PS I
Sbjct: 304 EGSVNKMHFCESCQLGKDSPDSPLESLPIPTSPHISTLPSPI 345


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 38/112 (33%), Positives = 55/112 (49%)
 Frame = +3

Query: 54  LFTRIPFN*FLFQAHCHTEQFFQGKSDKGLYPFLFSCHTSSSPSALLSNKASFSNWHQRL 233
           +F  I    FL +         +G+  KGLYP + S    SS   + +   SF  WH RL
Sbjct: 532 VFLEIHSKHFLIKDQATRRTVLKGRRQKGLYP-VPSASPPSSAKVVCAVTPSFERWHSRL 590

Query: 234 GHSSSRILHQVLSRNKLVVQHSTQSSSFCKDCQLGKRHKLSSPVSVSKTTCP 389
           GHSS+ I+ +V+S+NKL     +   S C  C   K H+L    S+S ++ P
Sbjct: 591 GHSSAPIISRVISKNKLPCLDESNKESVCDACLKAKSHQLPYSKSLSISSHP 642


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/90 (41%), Positives = 47/90 (52%)
 Frame = +3

Query: 120 QGKSDKGLYPFLFSCHTSSSPSALLSNKASFSNWHQRLGHSSSRILHQVLSRNKLVVQHS 299
           +GK   GLYP   S   S++  AL + K S S WH RLGH S  I+ QV+SRN L     
Sbjct: 428 EGKCRHGLYPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCSVE 487

Query: 300 TQSSSFCKDCQLGKRHKLSSPVSVSKTTCP 389
           + + S C  CQ  K H+L    S S +  P
Sbjct: 488 SVNQSVCNACQEAKSHQLPYIRSTSVSQFP 517