BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030658
         (556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188138.1| pentatricopeptide repeat-containing protein [Ar...    91   9e-17
ref|XP_002885074.1| pentatricopeptide repeat-containing protein ...    90   2e-16
ref|XP_002532249.1| pentatricopeptide repeat-containing protein,...    90   2e-16
ref|XP_003522141.1| PREDICTED: putative pentatricopeptide repeat...    87   2e-15
ref|XP_003595769.1| Pentatricopeptide repeat-containing protein ...    87   2e-15

>ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g15200 gi|11994509|dbj|BAB02574.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332642110|gb|AEE75631.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 91.3 bits (225), Expect = 9e-17
 Identities = 39/64 (60%), Positives = 53/64 (82%)
 Frame = +1

Query: 1   VQSVWTEMEKNGVGPDQRSYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITN 180
           V+ +W+EME++G+GPDQR+YTI IH LH KG++ EAL  F+EMMSKGM+ EPRT++L+  
Sbjct: 440 VREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQ 499

Query: 181 MKTK 192
            KTK
Sbjct: 500 NKTK 503


>ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330914|gb|EFH61333.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 517

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 39/64 (60%), Positives = 52/64 (81%)
 Frame = +1

Query: 1   VQSVWTEMEKNGVGPDQRSYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITN 180
           V+ +W EME++G+GPDQR+YTI IH LH KG++ EAL  F+EMMSKGM+ EPRT++L+  
Sbjct: 434 VREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQ 493

Query: 181 MKTK 192
            KTK
Sbjct: 494 NKTK 497


>ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528067|gb|EEF30143.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
 Frame = +1

Query: 1   VQSVWTEMEKNGVGPDQRSYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITN 180
           V   W EMEK G+GPD+RSYTIMIH L++KGR+ +AL  F EM SKGM+ EPRT++L+++
Sbjct: 411 VGDTWNEMEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEPRTEMLVSS 470

Query: 181 MKTKLNERKHQHGGCE-IGEVR--GSAKQRKKNI 273
           M  KL +   + G  + I  V+  GS  +R++ I
Sbjct: 471 MNMKLKDNDAEQGEKDAINGVKSLGSMHKRRREI 504


>ref|XP_003522141.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 258

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 40/78 (51%), Positives = 57/78 (73%)
 Frame = +1

Query: 1   VQSVWTEMEKNGVGPDQRSYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITN 180
           V+  W EME+NG GP++RSYTIMIH   +KGRV++A++  +EM+SKGM+ EPRTD L+++
Sbjct: 177 VRKTWEEMERNGWGPNRRSYTIMIHENFEKGRVKDAVRYLEEMISKGMVLEPRTDKLVSS 236

Query: 181 MKTKLNERKHQHGGCEIG 234
           M  +L  R  +H   E G
Sbjct: 237 MNIRLKGRTKKHEDVEGG 254


>ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484817|gb|AES66020.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 497

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 38/77 (49%), Positives = 57/77 (74%)
 Frame = +1

Query: 1   VQSVWTEMEKNGVGPDQRSYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITN 180
           ++  W EME+NG+GPD+RSYTIMIH  ++ GR ++A++ F+EM SKG++ EPRT+ L+ +
Sbjct: 416 LRKTWDEMERNGLGPDRRSYTIMIHGHYENGRTKDAMRYFQEMTSKGIVLEPRTEKLVIS 475

Query: 181 MKTKLNERKHQHGGCEI 231
           M  +L ER  +  G EI
Sbjct: 476 MNGQLKERTEKQEGVEI 492