BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030611
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri...   122   4e-26
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   121   5e-26
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   121   5e-26
ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, I...   121   7e-26

>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  123 bits (308), Expect = 2e-26
 Identities = 59/86 (68%), Positives = 70/86 (81%)
 Frame = -3

Query: 362 FHFELFEEKELIANITEHHLVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPISRYYG 183
           FH E+F+E EL+ NI EH LVP+H+VLS EEK+ LL+RYT  ETQLPR+ ITDPI+RYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 182 LTRGQVVKITRKSDTAGEYETYRIVV 105
           L RGQVVKI R S+TAG Y TYR V+
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 225

 Score =  122 bits (305), Expect = 4e-26
 Identities = 59/89 (66%), Positives = 71/89 (79%)
 Frame = -3

Query: 371 AQYFHFELFEEKELIANITEHHLVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPISR 192
           A  FH E+F+E EL+ NI EH LVP+H+VL+ EEK+ LL+RYT  ETQLPR+ I+DPI+R
Sbjct: 137 ASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQISDPIAR 196

Query: 191 YYGLTRGQVVKITRKSDTAGEYETYRIVV 105
           YYGL RGQVVKI R S+TAG Y TYR VV
Sbjct: 197 YYGLKRGQVVKIIRPSETAGRYVTYRYVV 225


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  121 bits (304), Expect = 5e-26
 Identities = 57/86 (66%), Positives = 71/86 (82%)
 Frame = -3

Query: 362 FHFELFEEKELIANITEHHLVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPISRYYG 183
           FH E+F+E E++ NI EH LVP+H+VL+TEEK+ LL+RYT  ETQLPR+ +TDPI+RY+G
Sbjct: 120 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 179

Query: 182 LTRGQVVKITRKSDTAGEYETYRIVV 105
           L RGQVVKI R S+TAG Y TYR VV
Sbjct: 180 LKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  121 bits (304), Expect = 5e-26
 Identities = 57/86 (66%), Positives = 71/86 (82%)
 Frame = -3

Query: 362 FHFELFEEKELIANITEHHLVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPISRYYG 183
           FH E+F+E E++ NI EH LVP+H+VL+TEEK+ LL+RYT  ETQLPR+ +TDPI+RY+G
Sbjct: 120 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 179

Query: 182 LTRGQVVKITRKSDTAGEYETYRIVV 105
           L RGQVVKI R S+TAG Y TYR VV
Sbjct: 180 LKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 208

 Score =  121 bits (303), Expect = 7e-26
 Identities = 56/98 (57%), Positives = 76/98 (77%)
 Frame = -3

Query: 398 AKKSIDKKNAQYFHFELFEEKELIANITEHHLVPKHKVLSTEEKQELLDRYTSHETQLPR 219
           A+  + +  ++ FH E+F+E EL+ NI +H LVP+H++L+ EEK+ LL+RYT  ETQLPR
Sbjct: 111 ARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPR 170

Query: 218 MLITDPISRYYGLTRGQVVKITRKSDTAGEYETYRIVV 105
           + +TDP++RYYGL RGQVVKI R S+TAG Y TYR VV
Sbjct: 171 IQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 208