BLASTX nr result
ID: Coptis25_contig00030584
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00030584
(860 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003521270.1| PREDICTED: F-box/LRR-repeat protein 17-like ... 229 6e-58
ref|XP_002307626.1| predicted protein [Populus trichocarpa] gi|2... 227 2e-57
ref|XP_002300803.1| predicted protein [Populus trichocarpa] gi|2... 226 4e-57
ref|XP_003553479.1| PREDICTED: F-box/LRR-repeat protein 17-like ... 224 3e-56
ref|XP_002520982.1| F-box/leucine rich repeat protein, putative ... 219 5e-55
>ref|XP_003521270.1| PREDICTED: F-box/LRR-repeat protein 17-like [Glycine max]
Length = 572
Score = 229 bits (584), Expect = 6e-58
Identities = 118/187 (63%), Positives = 140/187 (74%), Gaps = 2/187 (1%)
Frame = +1
Query: 262 GIQFATAQLPLLELMDCGMTICDPDSQN--FDEENGSNSTIAAGEPNYLQKTPNSKLHLI 435
GIQFATAQLP LELMDCGMTIC+P+S + DE N LQKT ++ LHL
Sbjct: 396 GIQFATAQLPHLELMDCGMTICEPNSHHPTADENNRK-----------LQKTSSTNLHLT 444
Query: 436 YQKLIMKHSRLKKLSLWGCSGLDALYLNCPELHDLNLNSRSNLHPERLQLQCPSMRNVHA 615
QKLI+KHS LKKLSLWGCSGLDALYLNCP+L+DLNLNS NLHPERL LQCPS+ NVHA
Sbjct: 445 NQKLIIKHSCLKKLSLWGCSGLDALYLNCPQLNDLNLNSCRNLHPERLLLQCPSLENVHA 504
Query: 616 SGCQNMLVRAIKSQVCNDFTDRDDHYTFKRLGDGSKRIRVPHFVNQQTPDSDKRK*FFDR 795
SGCQ+ML+ AI+SQVCN FTD ++ KRL DGSKR++VPH VN ++P+ +K++ R
Sbjct: 505 SGCQDMLIEAIQSQVCNAFTDMENPSPCKRLPDGSKRVQVPHLVNSESPEDEKKQRRKKR 564
Query: 796 LPCTVHV 816
C V V
Sbjct: 565 RLCNVVV 571
Score = 97.8 bits (242), Expect = 3e-18
Identities = 55/99 (55%), Positives = 63/99 (63%)
Frame = +2
Query: 2 VRLCNAVVLVLADANLSGLRMLSLVLGSEITDASVAAIASSYPNXXXXXXXXXXXXXXXX 181
+RL +A VL L A LSGLRMLSL+LGSE+TDAS+AAIASSY N
Sbjct: 311 MRLSHAAVLALTAAKLSGLRMLSLILGSEVTDASIAAIASSYLNLELLDLSGSSVSDSGV 370
Query: 182 XMICNELPETLCRLLLALCPNITSINVAFNLPQLSYLFL 298
MICN ETL RLLLALCPN+TS + F QL +L L
Sbjct: 371 SMICNVFSETLTRLLLALCPNVTSSGIQFATAQLPHLEL 409
>ref|XP_002307626.1| predicted protein [Populus trichocarpa] gi|222857075|gb|EEE94622.1|
predicted protein [Populus trichocarpa]
Length = 588
Score = 227 bits (579), Expect = 2e-57
Identities = 119/186 (63%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 GIQFATAQLPLLELMDCGMTICDPDSQNFD-EENGSNSTIAAGEPNYLQKTPNSKLHLIY 438
GIQFATAQLPLLELMDCGMTICDP SQN +E+G LQ T +KLHLIY
Sbjct: 411 GIQFATAQLPLLELMDCGMTICDPSSQNPTCDESGDFE---------LQMTFKNKLHLIY 461
Query: 439 QKLIMKHSRLKKLSLWGCSGLDALYLNCPELHDLNLNSRSNLHPERLQLQCPSMRNVHAS 618
QKLI+KHSRLKKLSLWGCSGLDALYLNCPEL+DLNLNS NLHPER+ LQCPS+ +VHAS
Sbjct: 462 QKLIIKHSRLKKLSLWGCSGLDALYLNCPELNDLNLNSCKNLHPERVLLQCPSLESVHAS 521
Query: 619 GCQNMLVRAIKSQVCNDFTDRDDHYTFKRLGDGSKRIRVPHFVNQQTPDSDKRK*FFDRL 798
GC +L AI+SQV N+ ++ KRL DGSKR+RVP F++QQ D DK++
Sbjct: 522 GCHRLLTGAIQSQVSNNLDAMENQSPHKRLADGSKRVRVPLFLSQQPCDEDKKRRRIGSR 581
Query: 799 PCTVHV 816
PC V V
Sbjct: 582 PCKVLV 587
Score = 91.7 bits (226), Expect = 2e-16
Identities = 54/98 (55%), Positives = 58/98 (59%)
Frame = +2
Query: 5 RLCNAVVLVLADANLSGLRMLSLVLGSEITDASVAAIASSYPNXXXXXXXXXXXXXXXXX 184
RL +A VL L ANL GLRMLSLV G+EITDASVAAI+ SY
Sbjct: 327 RLSHATVLALTAANLRGLRMLSLVFGTEITDASVAAISQSYSKLELLDLSGSSISDSGIG 386
Query: 185 MICNELPETLCRLLLALCPNITSINVAFNLPQLSYLFL 298
MICN P TL RLLLALCPNITS + F QL L L
Sbjct: 387 MICNVFPGTLSRLLLALCPNITSSGIQFATAQLPLLEL 424
>ref|XP_002300803.1| predicted protein [Populus trichocarpa] gi|222842529|gb|EEE80076.1|
predicted protein [Populus trichocarpa]
Length = 588
Score = 226 bits (577), Expect = 4e-57
Identities = 117/186 (62%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 GIQFATAQLPLLELMDCGMTICDPDSQN-FDEENGSNSTIAAGEPNYLQKTPNSKLHLIY 438
GIQFATAQLPLLELMDCGMTICD SQ +E+G LQ T +KLHLIY
Sbjct: 411 GIQFATAQLPLLELMDCGMTICDLSSQYPTSDESGDFE---------LQTTFKNKLHLIY 461
Query: 439 QKLIMKHSRLKKLSLWGCSGLDALYLNCPELHDLNLNSRSNLHPERLQLQCPSMRNVHAS 618
QK+I+KHSRLKKLSLWGCSGLDALYLNCPEL DLNLNS NLHPER+ LQCPS+ +VHAS
Sbjct: 462 QKVIIKHSRLKKLSLWGCSGLDALYLNCPELIDLNLNSCKNLHPERVLLQCPSLESVHAS 521
Query: 619 GCQNMLVRAIKSQVCNDFTDRDDHYTFKRLGDGSKRIRVPHFVNQQTPDSDKRK*FFDRL 798
GC N+L+ I+SQV N+F ++ + KRL DGSKR+RVP F++QQ D DK++
Sbjct: 522 GCHNLLIEGIQSQVSNNFAAMENQFPNKRLADGSKRVRVPQFLSQQPYDEDKKRRRIASR 581
Query: 799 PCTVHV 816
PC V V
Sbjct: 582 PCNVLV 587
Score = 93.2 bits (230), Expect = 7e-17
Identities = 55/99 (55%), Positives = 59/99 (59%)
Frame = +2
Query: 2 VRLCNAVVLVLADANLSGLRMLSLVLGSEITDASVAAIASSYPNXXXXXXXXXXXXXXXX 181
VRL +A VL L ANL GLRMLSLVLG+EITDASV AI+ SY
Sbjct: 326 VRLSHAAVLALTAANLRGLRMLSLVLGTEITDASVVAISQSYSKLELLDLSGSSISDSGI 385
Query: 182 XMICNELPETLCRLLLALCPNITSINVAFNLPQLSYLFL 298
MICN P TL RLLLALCPNITS + F QL L L
Sbjct: 386 GMICNVFPGTLSRLLLALCPNITSSGIQFATAQLPLLEL 424
>ref|XP_003553479.1| PREDICTED: F-box/LRR-repeat protein 17-like [Glycine max]
Length = 578
Score = 224 bits (570), Expect = 3e-56
Identities = 118/187 (63%), Positives = 138/187 (73%), Gaps = 2/187 (1%)
Frame = +1
Query: 262 GIQFATAQLPLLELMDCGMTICDPDSQN--FDEENGSNSTIAAGEPNYLQKTPNSKLHLI 435
GIQFATAQLP LELMDCGMTIC+P+S + DE N LQKT + LHL
Sbjct: 402 GIQFATAQLPHLELMDCGMTICEPNSHHPTADESNRK-----------LQKTFATNLHLT 450
Query: 436 YQKLIMKHSRLKKLSLWGCSGLDALYLNCPELHDLNLNSRSNLHPERLQLQCPSMRNVHA 615
QKLI+KHS LKKLSLWGCSGLDALYLNCP+L+DLNLNS NLHPERL LQCPS+ NV+A
Sbjct: 451 NQKLIIKHSCLKKLSLWGCSGLDALYLNCPQLNDLNLNSCRNLHPERLLLQCPSLENVYA 510
Query: 616 SGCQNMLVRAIKSQVCNDFTDRDDHYTFKRLGDGSKRIRVPHFVNQQTPDSDKRK*FFDR 795
SGCQ+ML+ AI+SQVCN FTD ++ KRL DGSKR+RVPH VN ++P+ +K+ R
Sbjct: 511 SGCQDMLIGAIQSQVCNAFTDMENPSPCKRLPDGSKRVRVPHLVNTESPEDEKKGRRKKR 570
Query: 796 LPCTVHV 816
C V V
Sbjct: 571 RLCNVVV 577
Score = 94.7 bits (234), Expect = 2e-17
Identities = 55/99 (55%), Positives = 61/99 (61%)
Frame = +2
Query: 2 VRLCNAVVLVLADANLSGLRMLSLVLGSEITDASVAAIASSYPNXXXXXXXXXXXXXXXX 181
+ L +A VL L A L GLRMLSLVLGSE+TDASVAAIASSY N
Sbjct: 317 MHLSHAAVLALTAAQLRGLRMLSLVLGSEVTDASVAAIASSYLNLELLDLSGSSISDSGI 376
Query: 182 XMICNELPETLCRLLLALCPNITSINVAFNLPQLSYLFL 298
MICN ETL RLLLALCPN+TS + F QL +L L
Sbjct: 377 SMICNVFSETLTRLLLALCPNVTSSGIQFATAQLPHLEL 415
>ref|XP_002520982.1| F-box/leucine rich repeat protein, putative [Ricinus communis]
gi|223539819|gb|EEF41399.1| F-box/leucine rich repeat
protein, putative [Ricinus communis]
Length = 586
Score = 219 bits (559), Expect = 5e-55
Identities = 115/185 (62%), Positives = 133/185 (71%)
Frame = +1
Query: 262 GIQFATAQLPLLELMDCGMTICDPDSQNFDEENGSNSTIAAGEPNYLQKTPNSKLHLIYQ 441
GIQFATAQLPLLELMDCGMTICDP + D E + L+ + SKLHLIYQ
Sbjct: 412 GIQFATAQLPLLELMDCGMTICDPSGPSSD----------GSEEDELRTSFKSKLHLIYQ 461
Query: 442 KLIMKHSRLKKLSLWGCSGLDALYLNCPELHDLNLNSRSNLHPERLQLQCPSMRNVHASG 621
KLI+KH RLKKLSLWGCSGLDAL LNCPEL+DLNLNS NLHPERL LQCPS+ +V ASG
Sbjct: 462 KLIIKHGRLKKLSLWGCSGLDALCLNCPELNDLNLNSCKNLHPERLLLQCPSLESVDASG 521
Query: 622 CQNMLVRAIKSQVCNDFTDRDDHYTFKRLGDGSKRIRVPHFVNQQTPDSDKRK*FFDRLP 801
C +L+RAI+SQ+ N ++H KRL DGSKRIRVPHF+ QQ D D+++ P
Sbjct: 522 CHKLLIRAIQSQI-NSVGAMENHVPSKRLADGSKRIRVPHFMIQQPLDDDRKRRKIGCRP 580
Query: 802 CTVHV 816
C V V
Sbjct: 581 CNVLV 585
Score = 96.3 bits (238), Expect = 8e-18
Identities = 57/99 (57%), Positives = 60/99 (60%)
Frame = +2
Query: 2 VRLCNAVVLVLADANLSGLRMLSLVLGSEITDASVAAIASSYPNXXXXXXXXXXXXXXXX 181
VRL +A VL L ANL GLRMLSLVLG+EITDASVAAI SSY
Sbjct: 327 VRLSHAAVLALTAANLRGLRMLSLVLGTEITDASVAAITSSYSKLELLDLSGSSISDSGI 386
Query: 182 XMICNELPETLCRLLLALCPNITSINVAFNLPQLSYLFL 298
MICN P TL RLLLALCPNITS + F QL L L
Sbjct: 387 GMICNAFPGTLSRLLLALCPNITSSGIQFATAQLPLLEL 425