BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030515
         (415 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   144   1e-32
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   137   9e-31
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   137   9e-31
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   137   9e-31
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...   136   2e-30

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score =  144 bits (362), Expect = 1e-32
 Identities = 68/138 (49%), Positives = 90/138 (65%)
 Frame = +2

Query: 2   VKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVKDFFTYNMLPPDLNETFITLIPKIP 181
           VK +   KAPGPDG+Q VFYQ CWE VGP +T+ V +FF   +LP   N+  + LI K+ 
Sbjct: 301 VKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVA 360

Query: 182 CPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKIISPFQGAFVKGRFIGDNIGLASEI 361
            P+ I +FRP+SLCN  +KII+K++  RLK  + K+I P Q +F+ GR   DNI L  E 
Sbjct: 361 KPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEA 420

Query: 362 FHHMRMMKKKRQGWLALK 415
            H MR  KK R+GW+ LK
Sbjct: 421 VHSMR-RKKGRKGWMLLK 437


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  137 bits (345), Expect = 9e-31
 Identities = 64/131 (48%), Positives = 87/131 (66%)
 Frame = +2

Query: 23   KAPGPDGFQGVFYQSCWEVVGPLITKTVKDFFTYNMLPPDLNETFITLIPKIPCPDHISK 202
            KAPGPDG    FY+SCWE+VGP + K VK FF  + +   +N T I +IPKI  P+ +S 
Sbjct: 826  KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 885

Query: 203  FRPISLCNFTYKIISKLLANRLKTHLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMRMM 382
            +RPI+LCN  YKIISK L  RLK HL  I+S  Q AF+ GR + DN+ +A E+ H ++  
Sbjct: 886  YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 945

Query: 383  KKKRQGWLALK 415
            K+  Q ++A+K
Sbjct: 946  KRVSQSYMAVK 956


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  137 bits (345), Expect = 9e-31
 Identities = 64/131 (48%), Positives = 87/131 (66%)
 Frame = +2

Query: 23   KAPGPDGFQGVFYQSCWEVVGPLITKTVKDFFTYNMLPPDLNETFITLIPKIPCPDHISK 202
            KAPGPDG    FY+SCWE+VGP + K VK FF  + +   +N T I +IPKI  P+ +S 
Sbjct: 806  KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 865

Query: 203  FRPISLCNFTYKIISKLLANRLKTHLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMRMM 382
            +RPI+LCN  YKIISK L  RLK HL  I+S  Q AF+ GR + DN+ +A E+ H ++  
Sbjct: 866  YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 925

Query: 383  KKKRQGWLALK 415
            K+  Q ++A+K
Sbjct: 926  KRVSQSYMAVK 936


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  137 bits (345), Expect = 9e-31
 Identities = 64/138 (46%), Positives = 90/138 (65%)
 Frame = +2

Query: 2   VKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVKDFFTYNMLPPDLNETFITLIPKIP 181
           V+ +   KAPGPDG+Q VFYQ CWE VG  ++K V +FF   +LP   N+  + L+ K+ 
Sbjct: 253 VRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVA 312

Query: 182 CPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKIISPFQGAFVKGRFIGDNIGLASEI 361
            P+ I++FRP+SLCN  +KII+K++  RLK  + K+I P Q +F+ GR   DNI +  E 
Sbjct: 313 KPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEA 372

Query: 362 FHHMRMMKKKRQGWLALK 415
            H MR  KK R+GW+ LK
Sbjct: 373 VHSMR-RKKGRKGWMLLK 389


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score =  136 bits (342), Expect = 2e-30
 Identities = 65/131 (49%), Positives = 85/131 (64%)
 Frame = +2

Query: 23  KAPGPDGFQGVFYQSCWEVVGPLITKTVKDFFTYNMLPPDLNETFITLIPKIPCPDHISK 202
           KAPGPDGFQ VFYQ CW++VG  +++ V DFF    LP   N+  + LI K+  P+ I++
Sbjct: 5   KAPGPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPERITQ 64

Query: 203 FRPISLCNFTYKIISKLLANRLKTHLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMRMM 382
           FRPISLCN  +K I+K L  RLK  + K+I P Q +F+ GR   DNI +  E  H MR  
Sbjct: 65  FRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHSMR-R 123

Query: 383 KKKRQGWLALK 415
           KK R+GW+ LK
Sbjct: 124 KKGRKGWMLLK 134