BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030508
         (554 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]   211   8e-53
ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containi...   201   8e-50
ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containi...   186   2e-45
ref|XP_003574060.1| PREDICTED: pentatricopeptide repeat-containi...   161   6e-38
ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containi...   158   5e-37

>emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  211 bits (536), Expect = 8e-53
 Identities = 107/181 (59%), Positives = 134/181 (74%)
 Frame = -3

Query: 549 EEARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNGI 370
           +EA+ +F  MQL+GVKPD+ISW+AL+SGFARNG+ID +L  LEE+   GL+P V+SWNGI
Sbjct: 266 DEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGI 325

Query: 369 ISGCVQNEYFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDL 190
           ISGCVQN Y EDA  +F++MLW    PN +T A ILPAC  L  L LGK +H  A K  +
Sbjct: 326 ISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGI 385

Query: 189 LGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEGNMMEASVQLYS 10
           +GN++V GS+IDMYSKCG  D AE+VF K E KNTA+ NE+I AYVNEG + +A   L S
Sbjct: 386 VGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRS 445

Query: 9   M 7
           M
Sbjct: 446 M 446



 Score =  118 bits (295), Expect = 7e-25
 Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 12/195 (6%)
 Frame = -3

Query: 552  LEEARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNG 373
            +E+A  +  SMQ +G KPDVI++N ++SG ARNG   ++  LL E+  +GLKP V S+N 
Sbjct: 436  VEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNV 495

Query: 372  IISGCVQNEYFEDAFIVF------------NQMLWSFGKPNAVTFACILPACGALSDLLL 229
            +ISG  Q+    +A  VF            N++L    +PN +T    LPAC  L+    
Sbjct: 496  LISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQ 555

Query: 228  GKGMHACALKCDLLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVN 49
            GK +H   L+     NIFV  +L+DMY+KC   D A +VF +++ +NT   N ++  Y+N
Sbjct: 556  GKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIN 615

Query: 48   EGNMMEASVQLYSML 4
                 EA      ML
Sbjct: 616  NKQPEEALKLFLEML 630



 Score = 85.1 bits (209), Expect = 7e-15
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
 Frame = -3

Query: 513  NGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNEYFED 334
            NG +P++   +ALV  +A+   +D + ++   I G        SWN +++G + N+  E+
Sbjct: 566  NGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDG----RNTVSWNALMAGYINNKQPEE 621

Query: 333  AFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDL--LGNIFVGGSL 160
            A  +F +ML    +P+++TF  + PACG ++ +  G+G+H  A KC L  L N  +  +L
Sbjct: 622  ALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNA-IXSAL 680

Query: 159  IDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEG 43
            IDMY+KCG    A+ VF     K+  + N +I A+   G
Sbjct: 681  IDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHG 719



 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 1/166 (0%)
 Frame = -3

Query: 522 MQLNGVKPDVISWNALVSGFARNG-KIDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNE 346
           ++LN +K      N LV  + +N   ++++ +LL+EI        V ++  +I    ++E
Sbjct: 107 VKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPN----RTVPAYAALIRSYCRSE 162

Query: 345 YFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDLLGNIFVGG 166
            +++ F  F  M++    P+      IL AC A+    +GK +H   ++  +  ++FVG 
Sbjct: 163 QWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGN 222

Query: 165 SLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEGNMMEA 28
           +LI  YS CG    +  VF  M+ ++      +I AY+ EG   EA
Sbjct: 223 ALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEA 268


>ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 677

 Score =  201 bits (510), Expect = 8e-50
 Identities = 104/182 (57%), Positives = 128/182 (70%)
 Frame = -3

Query: 552 LEEARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNG 373
           L EA +VF SMQ +G+KPD+ISWNALVSGFAR G+ + +L  LE ++  GL+P V+SWNG
Sbjct: 250 LNEAMEVFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNG 309

Query: 372 IISGCVQNEYFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCD 193
           +ISGCVQN YF+DA  VF  ML     PN+VT A ILPAC  L DL LG+ +HA ALKC+
Sbjct: 310 VISGCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACAGLRDLGLGRAVHAYALKCE 369

Query: 192 LLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEGNMMEASVQLY 13
           L  NI+V GSL+DMYSKCG+ D AE +F K E KN  + NEII  Y+N+G    A     
Sbjct: 370 LCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGKNSWALEHFR 429

Query: 12  SM 7
           SM
Sbjct: 430 SM 431



 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 10/170 (5%)
 Frame = -3

Query: 543 ARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNGIIS 364
           A + F SMQ +G+KPDV+++N L++G+A+NG+  E+  LL ++    L P V S N ++S
Sbjct: 424 ALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVS 483

Query: 363 GCVQNEYFEDAFIVFNQMLWSFGK----------PNAVTFACILPACGALSDLLLGKGMH 214
           G  Q+    +A  +   ML +             PN VT    L AC +L+ L  GK +H
Sbjct: 484 GFQQSGLNYEALELCQTMLCTGSLLNKTIAFPVIPNTVTLTAALAACASLNLLHKGKEIH 543

Query: 213 ACALKCDLLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEII 64
              L+   + N F+  +LI+MY+KCG  D A +VF +++ +N    N +I
Sbjct: 544 GYMLRNYFVNNYFISSALINMYAKCGDIDSAIQVFSRIKNRNVVCWNALI 593



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
 Frame = -3

Query: 522 MQLNGVKPDVISWNALVSGFARNGK-IDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNE 346
           ++LN  + D +    L   + ++ K +D   ++ +EI     +  + ++  +I    ++E
Sbjct: 92  VKLNDCRVDNLFGKKLTKFYVKDVKCVDSDSKVFDEIP----ERTLPAYAALIRAYCRSE 147

Query: 345 YFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDLLGNIFVGG 166
            + + F  F  M+     P+      IL AC     +  GK  H  A++  ++ +I +  
Sbjct: 148 KWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRMVSDIVIEN 207

Query: 165 SLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEGNMMEASVQLYSM 7
           +L+D Y  CG    +  VF  M  K+      ++ AY+ EG + EA    +SM
Sbjct: 208 ALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSM 260


>ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 406

 Score =  186 bits (472), Expect = 2e-45
 Identities = 94/155 (60%), Positives = 115/155 (74%)
 Frame = -3

Query: 552 LEEARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNG 373
           L EA +VF SMQ +G+KPD+ISWNALVSGFAR G+ + +L  LE ++  GL+P V+SWNG
Sbjct: 250 LNEAMEVFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNG 309

Query: 372 IISGCVQNEYFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCD 193
           +ISGCVQN YF+DA  VF  ML     PN+VT A ILPAC  L DL LG+ +HA ALKC+
Sbjct: 310 VISGCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACAGLRDLGLGRAVHAYALKCE 369

Query: 192 LLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKN 88
           L  NI+V GSL+DMYSKCG+ D AE +F K E KN
Sbjct: 370 LCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKN 404



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
 Frame = -3

Query: 522 MQLNGVKPDVISWNALVSGFARNGK-IDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNE 346
           ++LN  + D +    L   + ++ K +D   ++ +EI     +  + ++  +I    ++E
Sbjct: 92  VKLNDCRVDNLFGKKLTKFYVKDVKCVDSDSKVFDEIP----ERTLPAYAALIRAYCRSE 147

Query: 345 YFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDLLGNIFVGG 166
            + + F  F  M+     P+      IL AC     +  GK  H  A++  ++ +I +  
Sbjct: 148 KWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRMVSDIVIEN 207

Query: 165 SLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEGNMMEASVQLYSM 7
           +L+D Y  CG    +  VF  M  K+      ++ AY+ EG + EA    +SM
Sbjct: 208 ALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSM 260


>ref|XP_003574060.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 735

 Score =  161 bits (408), Expect = 6e-38
 Identities = 81/165 (49%), Positives = 113/165 (68%)
 Frame = -3

Query: 522 MQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNEY 343
           MQ +GV+PDVISWN LVSGFARNG +  +L L +E+R  G+KP VSSWN IISGCVQN  
Sbjct: 1   MQASGVRPDVISWNTLVSGFARNGDLGAALHLFDEMRLRGVKPRVSSWNCIISGCVQNSR 60

Query: 342 FEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDLLGNIFVGGS 163
           +++A  +F +M      P+AVT A ILPAC  L  L +GK +H+  ++C +  N+++G S
Sbjct: 61  YDEALGIFQEMC-ETEMPDAVTVASILPACTGLMALGIGKQLHSYVVRCGIKLNVYIGSS 119

Query: 162 LIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEGNMMEA 28
           LI MYS+C +   A  VF  ++ +N  V NE+I +Y+N+G M +A
Sbjct: 120 LIGMYSECRQFAYARSVFSAIDERNVTVWNELIQSYINDGRMDKA 164



 Score = 96.3 bits (238), Expect = 3e-18
 Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 14/197 (7%)
 Frame = -3

Query: 552 LEEARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNG 373
           +++A + F+ MQ +G++PD++++N+ +SG+AR G+ + +  LL  +    LKP V S N 
Sbjct: 161 MDKAWEAFNLMQEDGLEPDIVTYNSFISGYARTGQKELAYELLSGMANFSLKPTVISMNA 220

Query: 372 IISGCVQNEYFEDAFIVFNQML--------WSFG------KPNAVTFACILPACGALSDL 235
           +ISG        DA   F  M         WSF       +PN  T   +L     L   
Sbjct: 221 LISGLHHYGLCADALEAFRYMQLPNREAKHWSFHDNNSPIQPNGTTITSVLSLLTDLKLH 280

Query: 234 LLGKGMHACALKCDLLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAY 55
             GK +H  AL+  L  NIFV   L+D+Y K G    A   F  +  KN    N ++ AY
Sbjct: 281 RFGKEVHCYALRNGLTSNIFVSSKLVDLYGKTGDMVSAANFFQGIRNKNVVTWNSLLAAY 340

Query: 54  VNEGNMMEASVQLYSML 4
            +      A    Y ML
Sbjct: 341 KHNRKPEVALKLFYEML 357



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
 Frame = -3

Query: 513 NGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNEYFED 334
           NG+  ++   + LV  + + G +  +    + IR       V +WN +++    N   E 
Sbjct: 293 NGLTSNIFVSSKLVDLYGKTGDMVSAANFFQGIRN----KNVVTWNSLLAAYKHNRKPEV 348

Query: 333 AFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDLLGNIFVG----- 169
           A  +F +ML S   PN VT   +L + G    L  G+ +H    K     N F G     
Sbjct: 349 ALKLFYEMLKSDLLPNLVTMHIVLLSSGMTMALRYGRELHGYINK-----NWFGGYPDTL 403

Query: 168 -GSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYV 52
             +LIDMY KCG+ D A  VF     K+ AV N ++  Y+
Sbjct: 404 ATALIDMYGKCGKIDDARLVFECTVEKDIAVWNAMMSCYL 443


>ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  158 bits (400), Expect = 5e-37
 Identities = 80/133 (60%), Positives = 98/133 (73%)
 Frame = -3

Query: 405 GLKPGVSSWNGIISGCVQNEYFEDAFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLG 226
           GL+P V+SWNGIISGCVQN Y EDA  +F++MLW    PN +T A ILPAC  L  L LG
Sbjct: 5   GLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLG 64

Query: 225 KGMHACALKCDLLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNE 46
           K +HA ALK  ++GN++V GS+IDMYSKCG  D AE+VF+K E KNTA+ NE+I AYVNE
Sbjct: 65  KAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNE 124

Query: 45  GNMMEASVQLYSM 7
           G + +A   L SM
Sbjct: 125 GKVEDALGLLRSM 137



 Score =  115 bits (288), Expect = 5e-24
 Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 12/195 (6%)
 Frame = -3

Query: 552 LEEARDVFDSMQLNGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNG 373
           +E+A  +  SMQ +G KPDVI++N ++SG ARNG   ++  LL E+  +GLKP V S+N 
Sbjct: 127 VEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNV 186

Query: 372 IISGCVQNEYFEDAFIVF------------NQMLWSFGKPNAVTFACILPACGALSDLLL 229
           +ISG  Q+    +A  VF            N++L    +PN +T    LPAC  L+    
Sbjct: 187 LISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQ 246

Query: 228 GKGMHACALKCDLLGNIFVGGSLIDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVN 49
           GK +H   L+     NIFV  +L+DMY+KC   D A +VF +++ +NT   N ++  Y+ 
Sbjct: 247 GKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIY 306

Query: 48  EGNMMEASVQLYSML 4
                EA      ML
Sbjct: 307 NKQPEEALKLFLEML 321



 Score = 85.1 bits (209), Expect = 7e-15
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
 Frame = -3

Query: 513 NGVKPDVISWNALVSGFARNGKIDESLRLLEEIRGIGLKPGVSSWNGIISGCVQNEYFED 334
           NG +P++   +ALV  +A+   +D + ++   I G        SWN +++G + N+  E+
Sbjct: 257 NGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDG----RNTVSWNALMAGYIYNKQPEE 312

Query: 333 AFIVFNQMLWSFGKPNAVTFACILPACGALSDLLLGKGMHACALKCDL--LGNIFVGGSL 160
           A  +F +ML    +P+++TF  + PACG ++ +  G+G+H  A KC L  L N  +  +L
Sbjct: 313 ALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNA-IASAL 371

Query: 159 IDMYSKCGRRDLAERVFMKMEIKNTAVINEIIMAYVNEG 43
           IDMY+KCG    A+ VF     K+  + N +I A+   G
Sbjct: 372 IDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHG 410