BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030491
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002456045.1| hypothetical protein SORBIDRAFT_03g029460 [S...   100   1e-19
ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_002866756.1| pentatricopeptide repeat-containing protein ...    96   2e-18
ref|NP_201453.1| pentatricopeptide repeat-containing protein [Ar...    93   2e-17
gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indi...    92   6e-17

>ref|XP_002456045.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
           gi|241928020|gb|EES01165.1| hypothetical protein
           SORBIDRAFT_03g029460 [Sorghum bicolor]
          Length = 615

 Score =  100 bits (249), Expect = 1e-19
 Identities = 45/83 (54%), Positives = 60/83 (72%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           YAKCGCMS AL+VFR +   +T SWN+LI GF+QN    EAL +F EM  + + P+ +T 
Sbjct: 267 YAKCGCMSDALQVFRTMPVRSTKSWNILIDGFVQNQRHKEALTVFQEMISTGLTPDAVTL 326

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
            + LSACAQLGDL+Q + +HNY+
Sbjct: 327 ASVLSACAQLGDLQQARDVHNYI 349


>ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 45/83 (54%), Positives = 56/83 (67%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           Y KCGCMS A + F+ +   NT SWN LI GF+QNG   EAL +F EM    + P+ IT 
Sbjct: 268 YVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITL 327

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
           V+ LS  AQLGDL+QG+ LHNY+
Sbjct: 328 VSVLSTYAQLGDLQQGRYLHNYI 350



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           YAKCG M++A  +F N++  + VSW  ++ G+++      A  LF +MK  D+  +E+  
Sbjct: 369 YAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMAL 428

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
           V+ LSAC+QLG L++G+ +H+Y+
Sbjct: 429 VSLLSACSQLGALDKGREIHSYI 451



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHE-MKKSDIRPNEIT 77
           YAKCGC+ +A E+F  +    T++WN +IGG    G   EA+ LF + +K  D +P+ IT
Sbjct: 470 YAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAIT 529

Query: 76  FVNTLSACAQLGDLEQG 26
               L AC  +G +++G
Sbjct: 530 LKVVLCACTHVGMVDEG 546


>ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312591|gb|EFH43015.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 649

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 43/83 (51%), Positives = 58/83 (69%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           YAK G M  AL +FR +   N +SW  +I G++Q G   EAL+LFHEM+ SD+ P+ ++ 
Sbjct: 220 YAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSL 279

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
            N LSACAQLG LEQGK +H+Y+
Sbjct: 280 ANALSACAQLGALEQGKWIHSYL 302



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 37/79 (46%), Positives = 51/79 (64%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           YAKCG M  ALEVF+NI   +  +W  LI G+  +G   EA+  F EM+K  I+PN ITF
Sbjct: 321 YAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 380

Query: 73  VNTLSACAQLGDLEQGKVL 17
              L+AC+  G +E+GK++
Sbjct: 381 TTVLTACSYTGLVEEGKLI 399


>ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g66520 gi|10177533|dbj|BAB10928.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332010841|gb|AED98224.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/83 (49%), Positives = 57/83 (68%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           Y K G M  AL +FR ++  N +SW  +I G++Q     EAL+LFHEM+ SD+ P+ ++ 
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
            N LSACAQLG LEQGK +H+Y+
Sbjct: 251 ANALSACAQLGALEQGKWIHSYL 273



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 37/79 (46%), Positives = 51/79 (64%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           YAKCG M  ALEVF+NI   +  +W  LI G+  +G   EA+  F EM+K  I+PN ITF
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 351

Query: 73  VNTLSACAQLGDLEQGKVL 17
              L+AC+  G +E+GK++
Sbjct: 352 TAVLTACSYTGLVEEGKLI 370


>gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           Y KCGC+S ALE F+ +    T SWN LI GF+QN    EALR+F EM    + P+ IT 
Sbjct: 267 YTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITL 326

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
           V+ LSACAQLG+L +G  +H+Y+
Sbjct: 327 VSVLSACAQLGELRKGMHVHSYI 349



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEM-KKSDIRPNEIT 77
           YAKCGC+ +A E+FR +    T+SWN +IGG   NG+  EA+ LF +M +  D +P+ IT
Sbjct: 469 YAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGIT 528

Query: 76  FVNTLSACAQLGDLEQG 26
               L ACA +G +++G
Sbjct: 529 LKAVLGACAHVGMVDEG 545



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/83 (39%), Positives = 58/83 (69%)
 Frame = -3

Query: 253 YAKCGCMSSALEVFRNISTANTVSWNVLIGGFLQNGFPSEALRLFHEMKKSDIRPNEITF 74
           YAKCG M++A  VF+ ++  + VSW V++ G+++    + A  LF EMK +++  +E+  
Sbjct: 368 YAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMAL 427

Query: 73  VNTLSACAQLGDLEQGKVLHNYV 5
           V+ LSAC+QLG L++G+ +H+Y+
Sbjct: 428 VSLLSACSQLGALDKGREIHSYI 450