BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030472
         (809 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...   300   3e-79
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...   293   3e-77
ref|XP_002516323.1| ATP binding protein, putative [Ricinus commu...   289   6e-76
ref|XP_002306264.1| chromatin remodeling complex subunit [Populu...   285   1e-74
ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-...   270   4e-70

>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
            gi|296088517|emb|CBI37508.3| unnamed protein product
            [Vitis vinifera]
          Length = 1043

 Score =  300 bits (767), Expect = 3e-79
 Identities = 152/265 (57%), Positives = 186/265 (70%), Gaps = 6/265 (2%)
 Frame = -1

Query: 779  NTVDRINDNGTQKKGYSMKKIEIKPYDILKESSLVVDYDDENPND----ILSSGESGKRV 612
            N + R++ N    +  + +++ +    + + S    + ++E+ N     ILS  +  +  
Sbjct: 217  NFISRVHGNRHNGEAANSRRVNVNSVPMGQSSVCDFEEEEEDGNSDDCVILSGKKVVEAA 276

Query: 611  QSRAPRAKNEVKGSISVDALEDPGGDWVFEDGESIILTGKPSNYMLPGKIAKMLYPHQRS 432
             SR  + K E   S  VD L+D     V ED  +I L+G  S Y LPGKIAKMLYPHQR 
Sbjct: 277  VSRGSKFKEEYDDSDVVDVLDDCTDGSVLEDESAITLSGPRSTYKLPGKIAKMLYPHQRD 336

Query: 431  GLRWLWSLHCKGTGGILGDDMGLGKTMQICSFLAGLFHSGLIKRVMIVAPKTLLSHWIKE 252
            GL+WLWSLHC+G GGILGDDMGLGKTMQIC FLAGLFHS L++R ++VAPKTLLSHWIKE
Sbjct: 337  GLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSCLLRRAVVVAPKTLLSHWIKE 396

Query: 251  LTVVGLSEKIREYYGSCVKARQYELQYIFQDKGILLTTYDIVRNNFKSLRGDSYFDD--D 78
            L+ VGLSEK REYYG+C K RQYELQY+ QDKG+LLTTYDIVRNN KSL G +YF D   
Sbjct: 397  LSAVGLSEKTREYYGTCTKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLCGGNYFHDKRS 456

Query: 77   CEDIIWDYTILDEGHIIKNPSTQRA 3
             +D  WDY ILDEGH+IKNPSTQRA
Sbjct: 457  EDDFTWDYMILDEGHLIKNPSTQRA 481


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222852831|gb|EEE90378.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1108

 Score =  293 bits (750), Expect = 3e-77
 Identities = 161/266 (60%), Positives = 186/266 (69%), Gaps = 3/266 (1%)
 Frame = -1

Query: 791  DKGYNTVDRINDNGTQKKGYSMKKIEIKPYDILKESSLVVDYDDENPNDILSSGESGKRV 612
            +K  N   R+ +N        ++ +       L++ S     DDE+   +L+  +  K+V
Sbjct: 282  EKTKNVTQRVKENEPDGFNERLRSVGRSSVLSLRDES----EDDEDDCVVLTGKKVVKKV 337

Query: 611  QSRAPRAK-NEVKGSISVDALEDPGGDWVFEDGESIILTGKPSNYMLPGKIAKMLYPHQR 435
                  AK N + G      LE+       ED  SIIL G  S Y LPGKIAKMLYPHQ 
Sbjct: 338  GRPGAIAKYNVLSGESETAVLENHAES---EDDGSIILPGLKSTYKLPGKIAKMLYPHQC 394

Query: 434  SGLRWLWSLHCKGTGGILGDDMGLGKTMQICSFLAGLFHSGLIKRVMIVAPKTLLSHWIK 255
             GLRWLWSLHCKG GGILGDDMGLGKTMQICSFLAGLFHS LIKRV++VAPKTLL+HWIK
Sbjct: 395  EGLRWLWSLHCKGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRVLVVAPKTLLTHWIK 454

Query: 254  ELTVVGLSEKIREYYGSCVKARQYELQYIFQDKGILLTTYDIVRNNFKSLRGDSYF-DDD 78
            EL+VVGLS K REY+G+ +KAR YELQYI QDKGILLTTYDIVRNN KSLRGD YF D++
Sbjct: 455  ELSVVGLSGKTREYFGTSLKARDYELQYILQDKGILLTTYDIVRNNSKSLRGDHYFLDEE 514

Query: 77   CED-IIWDYTILDEGHIIKNPSTQRA 3
             ED  IWDY ILDEGH+IKNPSTQRA
Sbjct: 515  SEDSYIWDYMILDEGHLIKNPSTQRA 540


>ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
           gi|223544553|gb|EEF46070.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 1109

 Score =  289 bits (739), Expect = 6e-76
 Identities = 147/223 (65%), Positives = 166/223 (74%), Gaps = 2/223 (0%)
 Frame = -1

Query: 665 DDENPNDILSSGESGKRVQSRAPRAKNEVKGSISVDALEDPGGDWVFEDGESIILTGKPS 486
           DDE    +LS  +  +       + K     S  +D L+D   D V +DG SI L+G  S
Sbjct: 330 DDEEDCLVLSRKKVVEEAGKLGGKNKEPCNLSSPIDLLDDDTDDSVLDDGGSITLSGPRS 389

Query: 485 NYMLPGKIAKMLYPHQRSGLRWLWSLHCKGTGGILGDDMGLGKTMQICSFLAGLFHSGLI 306
            + LP KIA MLYPHQR GL+WLWSLHC G GGILGDDMGLGKTMQIC FLAGLFHS LI
Sbjct: 390 TFELPSKIATMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLI 449

Query: 305 KRVMIVAPKTLLSHWIKELTVVGLSEKIREYYGSCVKARQYELQYIFQDKGILLTTYDIV 126
           KR ++VAPKTLL+HWIKEL  VGLS K REY+G+ +KARQYELQYI QDKGILLTTYDIV
Sbjct: 450 KRALVVAPKTLLAHWIKELAAVGLSRKTREYFGTSLKARQYELQYILQDKGILLTTYDIV 509

Query: 125 RNNFKSLRGDSYF-DDDCED-IIWDYTILDEGHIIKNPSTQRA 3
           RNN KSLRGD YF D++ ED   WDY ILDEGH+IKNPSTQRA
Sbjct: 510 RNNSKSLRGDDYFADEESEDGYTWDYMILDEGHLIKNPSTQRA 552


>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222855713|gb|EEE93260.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1058

 Score =  285 bits (728), Expect = 1e-74
 Identities = 160/270 (59%), Positives = 185/270 (68%), Gaps = 6/270 (2%)
 Frame = -1

Query: 794  KDKGYNTVDRINDNGTQKKGYSMKKIEIKPYDILKESSLVVDYDDENPND---ILSSGES 624
            +D     V++ N    + K     +   K   + + S L +  + E+  D   +L+S + 
Sbjct: 251  RDDYVTRVEKTNKVALKVKKNEPTRFHEKLRSVGRSSLLSLRDEPEDKGDDCEVLTSKKV 310

Query: 623  GKRVQSRAPRAK-NEVKGSISVDALEDPGGDWVFEDGESIILTGKPSNYMLPGKIAKMLY 447
             K+V      AK N +    SV  + D   D   ED   I L G  S Y L G IAKMLY
Sbjct: 311  VKKVGRPDAIAKYNLLSDESSVTDVLDNHAD--SEDDSCITLPGPKSTYKLSGTIAKMLY 368

Query: 446  PHQRSGLRWLWSLHCKGTGGILGDDMGLGKTMQICSFLAGLFHSGLIKRVMIVAPKTLLS 267
            PHQR GLRWLWSLHC+G GGILGDDMGLGKTMQICSFLAGLFHS LIKR ++VAPKTLLS
Sbjct: 369  PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLS 428

Query: 266  HWIKELTVVGLSEKIREYYGSCVKARQYELQYIFQDKGILLTTYDIVRNNFKSLRGDSYF 87
            HWIKEL+VVGLS K REY+G+ +KAR YELQYI QDKGILLTTYDIVRNN KSLRGD YF
Sbjct: 429  HWIKELSVVGLSAKTREYFGTSLKARDYELQYILQDKGILLTTYDIVRNNSKSLRGDHYF 488

Query: 86   -DDDCED-IIWDYTILDEGHIIKNPSTQRA 3
             DD+ ED  IWDY ILDEGH+IKNPSTQRA
Sbjct: 489  IDDESEDSYIWDYMILDEGHLIKNPSTQRA 518


>ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
          Length = 1030

 Score =  270 bits (689), Expect = 4e-70
 Identities = 143/226 (63%), Positives = 166/226 (73%), Gaps = 6/226 (2%)
 Frame = -1

Query: 662 DENPNDILSSGES-GKRVQSRAPRAKNEVKGSISVDALEDPGGDWVFE---DGESIILTG 495
           D++ ++  S+G S   + +S +   KN     I  DA +       FE   DG SI  TG
Sbjct: 253 DDDGSEFGSAGSSFSPQQESLSEGTKNGDGDDIEYDANDSVQELDHFEPETDG-SITFTG 311

Query: 494 KPSNYMLPGKIAKMLYPHQRSGLRWLWSLHCKGTGGILGDDMGLGKTMQICSFLAGLFHS 315
             S Y L  KIAKMLYPHQR GL+WLWSLHC G GGILGDDMGLGKTMQ+C FLAGLFHS
Sbjct: 312 PRSTYKLQAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHS 371

Query: 314 GLIKRVMIVAPKTLLSHWIKELTVVGLSEKIREYYGSCVKARQYELQYIFQDKGILLTTY 135
            LI+RV+IVAPKTLL HWIKEL+ VGLSEK REY+G+  K R+YELQYI QD G+LLTTY
Sbjct: 372 RLIRRVLIVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDNGVLLTTY 431

Query: 134 DIVRNNFKSLRGDSYFDDDC--EDIIWDYTILDEGHIIKNPSTQRA 3
           DIVRNN KSL+G++YFDD+   E   WDY ILDEGH+IKNPSTQRA
Sbjct: 432 DIVRNNSKSLQGNNYFDDEDNEEGATWDYMILDEGHLIKNPSTQRA 477