BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030455
         (664 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containi...   223   3e-56
ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   211   8e-53
emb|CBI16436.3| unnamed protein product [Vitis vinifera]              211   8e-53
ref|XP_003619639.1| Pentatricopeptide repeat-containing protein ...   201   8e-50
ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containi...   189   3e-46

>ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  223 bits (567), Expect = 3e-56
 Identities = 120/220 (54%), Positives = 147/220 (66%)
 Frame = -3

Query: 662 SNNQRLVSLLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXTYAHNVF 483
           ++NQ  +  LE CK+M QI Q HA LITTGLI HPI                 +YAH +F
Sbjct: 13  NSNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLF 72

Query: 482 VQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVLNRYTFVFVLKACSCGLR 303
            Q P PD+FIYNTMIKAH      S  S+ +F S VR S  + NRYTFVFV KAC  GL 
Sbjct: 73  DQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLG 132

Query: 302 ILEGEQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSNITSRDLCSWNSM 123
           +LEGEQ+  HA+K+GL+SN+FV N MI+MYA +GLV  AR+VFD +     +DL SWN M
Sbjct: 133 VLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS---LDQDLYSWNIM 189

Query: 122 IGGYVGVGDICEARVLFDEMQDREERDVVSWSTMMAGYVQ 3
           IGGYVG G+I  A+ +FDEM    ERDVVSW+T++AGYVQ
Sbjct: 190 IGGYVGSGEIGRAKEMFDEM---SERDVVSWTTIIAGYVQ 226


>ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  211 bits (538), Expect = 8e-53
 Identities = 115/216 (53%), Positives = 143/216 (66%)
 Frame = -3

Query: 650 RLVSLLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXTYAHNVFVQFP 471
           RLVSL++ CK+M QI Q HAQLITT LI HP+                  YAH +F Q P
Sbjct: 18  RLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAACASLS---YAHKLFDQIP 74

Query: 470 CPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVLNRYTFVFVLKACSCGLRILEG 291
            PD+FIYNTMIKAH  + H    SL+VFRS  +D  +  NRY+FVF   AC  GL + EG
Sbjct: 75  QPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEG 134

Query: 290 EQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSNITSRDLCSWNSMIGGY 111
           EQV  HAVK+GL++NVFVVN +I MY ++GLVG ++KVF        RDL SWN++I  Y
Sbjct: 135 EQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWA---VDRDLYSWNTLIAAY 191

Query: 110 VGVGDICEARVLFDEMQDREERDVVSWSTMMAGYVQ 3
           VG G++  A+ LFD M+   ERDVVSWST++AGYVQ
Sbjct: 192 VGSGNMSLAKELFDGMR---ERDVVSWSTIIAGYVQ 224


>emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  211 bits (538), Expect = 8e-53
 Identities = 114/205 (55%), Positives = 137/205 (66%)
 Frame = -3

Query: 617 MTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXTYAHNVFVQFPCPDIFIYNTMI 438
           M QI Q HA LITTGLI HPI                 +YAH +F Q P PD+FIYNTMI
Sbjct: 1   MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 60

Query: 437 KAHIPNAHFSPGSLLVFRSAVRDSSVVLNRYTFVFVLKACSCGLRILEGEQVCAHAVKLG 258
           KAH      S  S+ +F S VR S  + NRYTFVFV KAC  GL +LEGEQ+  HA+K+G
Sbjct: 61  KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIG 120

Query: 257 LDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSNITSRDLCSWNSMIGGYVGVGDICEARV 78
           L+SN+FV N MI+MYA +GLV  AR+VFD +     +DL SWN MIGGYVG G+I  A+ 
Sbjct: 121 LESNLFVTNAMIRMYANWGLVDEARRVFDWS---LDQDLYSWNIMIGGYVGSGEIGRAKE 177

Query: 77  LFDEMQDREERDVVSWSTMMAGYVQ 3
           +FDEM    ERDVVSW+T++AGYVQ
Sbjct: 178 MFDEM---SERDVVSWTTIIAGYVQ 199


>ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494654|gb|AES75857.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  201 bits (512), Expect = 8e-50
 Identities = 112/219 (51%), Positives = 140/219 (63%)
 Frame = -3

Query: 659 NNQRLVSLLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXTYAHNVFV 480
           N+ +L SL++ CK++ QI Q HA LITT  I  P+                 TYAH +F 
Sbjct: 178 NHSKLSSLIDLCKSINQIKQTHANLITTAQITLPV---IANKFLKNVALASLTYAHKLFD 234

Query: 479 QFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVLNRYTFVFVLKACSCGLRI 300
           Q P PD+FIYNTMIK+H  + H    S+ VFRS +RDS    NRY+FVF   AC  G+ +
Sbjct: 235 QIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCV 294

Query: 299 LEGEQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSNITSRDLCSWNSMI 120
            EGEQV  HAVK+GLD NVFVVN +I M+ ++G V  AR VFD   +   RD  SWN+MI
Sbjct: 295 REGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFD---SAVDRDFYSWNTMI 351

Query: 119 GGYVGVGDICEARVLFDEMQDREERDVVSWSTMMAGYVQ 3
           G YVG G++  A+ LFDEM    ERDVVSWST++AGYVQ
Sbjct: 352 GAYVGSGNMVLAKELFDEM---HERDVVSWSTIIAGYVQ 387


>ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
           gi|449516005|ref|XP_004165038.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  189 bits (481), Expect = 3e-46
 Identities = 103/212 (48%), Positives = 132/212 (62%)
 Frame = -3

Query: 638 LLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXTYAHNVFVQFPCPDI 459
           LL  CK+  QI Q+HA+LITTGLI HPIP                 YAH VF  FP PD+
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPIS-YAHMVFDHFPQPDL 65

Query: 458 FIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVLNRYTFVFVLKACSCGLRILEGEQVC 279
           F+YNT+IK    +   S  S   FRS +R+  +V N+Y+F F  K C  G+ +LEGEQV 
Sbjct: 66  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVR 125

Query: 278 AHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSNITSRDLCSWNSMIGGYVGVG 99
            HA+KLGL++N+FV N +I MY     V  ARKVFD + N   RD+ SWN M+ GY  +G
Sbjct: 126 VHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPN---RDMYSWNIMLSGYARLG 182

Query: 98  DICEARVLFDEMQDREERDVVSWSTMMAGYVQ 3
            + EAR LFDEM    E+DVVSW+TM++G +Q
Sbjct: 183 KMDEARQLFDEM---PEKDVVSWTTMISGCLQ 211



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 40/146 (27%), Positives = 73/146 (50%)
 Frame = -3

Query: 497 AHNVFVQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVLNRYTFVFVLKAC 318
           A  +F + P  D+  + TMI   +   +F   +L +F + +    +  N YT    L AC
Sbjct: 187 ARQLFDEMPEKDVVSWTTMISGCLQVGYFME-ALDIFHNMLA-KGMSPNEYTLASSLAAC 244

Query: 317 SCGLRILEGEQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSNITSRDLC 138
           +  + + +G  +  +  K  +  N  ++  +I MYA+ G + FA K+F+    +  R + 
Sbjct: 245 ANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRL-KRKVW 303

Query: 137 SWNSMIGGYVGVGDICEARVLFDEMQ 60
            WN+MIGG+   G   EA  +F++M+
Sbjct: 304 PWNAMIGGFAVHGKSKEAIEVFEQMK 329