BLASTX nr result

ID: Coptis25_contig00030442 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030442
         (517 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317745.1| predicted protein [Populus trichocarpa] gi|2...   216   3e-59
ref|XP_002331844.1| predicted protein [Populus trichocarpa] gi|2...   214   1e-58
ref|XP_002301398.1| predicted protein [Populus trichocarpa] gi|2...   209   4e-57
emb|CBI40474.3| unnamed protein product [Vitis vinifera]              217   9e-55
ref|XP_002276620.1| PREDICTED: solute carrier family 25 member 3...   216   2e-54

>ref|XP_002317745.1| predicted protein [Populus trichocarpa] gi|222858418|gb|EEE95965.1|
           predicted protein [Populus trichocarpa]
          Length = 360

 Score =  216 bits (551), Expect(2) = 3e-59
 Identities = 112/183 (61%), Positives = 125/183 (68%), Gaps = 30/183 (16%)
 Frame = +3

Query: 3   KTRLQAEAAGVPYSHSHHRFRGHLSPLGPNT----------------------------- 95
           KTRLQA+AAGV YSH        ++  GP                               
Sbjct: 39  KTRLQAQAAGVAYSHPLSNIISRMAYFGPTMMFADLRCSPSCTRAGVHGTVLICPPDCFQ 98

Query: 96  YSGTLDVFYKIIRQEGYGRLWRGTNAALALAIPTVGIYLPCYDIFRNWIEDFTIQNAPYM 275
           Y GTLDVFYKIIRQEG+ RLWRGTNAALALA+PTVGIYLPCYD+FRNW+ED T QN P  
Sbjct: 99  YKGTLDVFYKIIRQEGFARLWRGTNAALALAVPTVGIYLPCYDLFRNWLEDLTAQNIPGA 158

Query: 276 TPYAPLVAGSLARSIACISCYPIELARTRMQAFKESGL-KPPGVWKTLVGVVSPVRSANN 452
           TPY PLVAGSLARS+AC +CYPIELARTRMQAFK +   KPPGVWKTL+ V+S VRS NN
Sbjct: 159 TPYVPLVAGSLARSLACATCYPIELARTRMQAFKATQTGKPPGVWKTLLEVLSHVRSTNN 218

Query: 453 IQN 461
           +QN
Sbjct: 219 VQN 221



 Score = 37.0 bits (84), Expect(2) = 3e-59
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 466 YRLLWTGVGAQLARDVP 516
           YR LWTG+GAQLARDVP
Sbjct: 223 YRFLWTGMGAQLARDVP 239


>ref|XP_002331844.1| predicted protein [Populus trichocarpa] gi|222875082|gb|EEF12213.1|
           predicted protein [Populus trichocarpa]
          Length = 417

 Score =  214 bits (545), Expect(2) = 1e-58
 Identities = 111/184 (60%), Positives = 124/184 (67%), Gaps = 30/184 (16%)
 Frame = +3

Query: 3   KTRLQAEAAGVPYSHSHHRFRGHLSPLGPNT----------------------------- 95
           KTRLQ +AAGV YSH        ++  GP                               
Sbjct: 90  KTRLQTQAAGVAYSHPLSNIISRMAYFGPTMMFADLRCSPSCTHAGVHGTVSICPPDCFQ 149

Query: 96  YSGTLDVFYKIIRQEGYGRLWRGTNAALALAIPTVGIYLPCYDIFRNWIEDFTIQNAPYM 275
           Y GTLDVFYKIIRQEG  RLWRGTNA LALA+PTVGIYLPCYD+FRNW+ED T QN P  
Sbjct: 150 YKGTLDVFYKIIRQEGISRLWRGTNAGLALAVPTVGIYLPCYDLFRNWLEDLTAQNIPGA 209

Query: 276 TPYAPLVAGSLARSIACISCYPIELARTRMQAFKES-GLKPPGVWKTLVGVVSPVRSANN 452
           TPY PLVAGSLARS+AC +CYPIELARTRMQAFK +  +KPPGVWKTLV V+S VRS NN
Sbjct: 210 TPYVPLVAGSLARSLACATCYPIELARTRMQAFKAAQTVKPPGVWKTLVEVLSHVRSTNN 269

Query: 453 IQNL 464
           +QN+
Sbjct: 270 VQNV 273



 Score = 37.7 bits (86), Expect(2) = 1e-58
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +1

Query: 466 YRLLWTGVGAQLARDVP 516
           YR+LWTG+GAQLARDVP
Sbjct: 276 YRILWTGMGAQLARDVP 292


>ref|XP_002301398.1| predicted protein [Populus trichocarpa] gi|222843124|gb|EEE80671.1|
           predicted protein [Populus trichocarpa]
          Length = 399

 Score =  209 bits (531), Expect(2) = 4e-57
 Identities = 108/176 (61%), Positives = 126/176 (71%), Gaps = 22/176 (12%)
 Frame = +3

Query: 3   KTRLQAEAAGVPYS------------------HSHHRFRG--HLSPLGPNTYSGTLDVFY 122
           KTRLQA+AAGVPY                    S H   G   L     N Y G LDVF 
Sbjct: 79  KTRLQAQAAGVPYQGLCGTASFESNTMFPCVKSSSHAVPGSQQLCASECNRYKGALDVFN 138

Query: 123 KIIRQEGYGRLWRGTNAALALAIPTVGIYLPCYDIFRNWIEDFTIQNAPYMTPYAPLVAG 302
           K+IRQEG GRLWRGTNA+LALA+PTVGIY+PCYDIFRN +E+FTIQN P +TPY PLVAG
Sbjct: 139 KVIRQEGIGRLWRGTNASLALAVPTVGIYMPCYDIFRNSMEEFTIQNCPALTPYVPLVAG 198

Query: 303 SLARSIACISCYPIELARTRMQAFKE--SGLKPPGVWKTLVGVVSPVRSANNIQNL 464
           ++ARSI+CI+CYP+ELARTRMQAFKE  +G+KP GVWKTL+ V++PV   NN Q L
Sbjct: 199 AVARSISCITCYPVELARTRMQAFKETQAGVKPSGVWKTLIEVINPVGGTNNTQKL 254



 Score = 37.7 bits (86), Expect(2) = 4e-57
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +1

Query: 466 YRLLWTGVGAQLARDVP 516
           YR+LWTG+GAQLARDVP
Sbjct: 257 YRILWTGLGAQLARDVP 273


>emb|CBI40474.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  217 bits (552), Expect = 9e-55
 Identities = 122/204 (59%), Positives = 139/204 (68%), Gaps = 39/204 (19%)
 Frame = +3

Query: 3   KTRLQAEAAGVPYS----------------HSHHRFRGHLS--PLGPNT---YSGTLDVF 119
           KTRLQA+AAGV Y                 +S    R  LS  P+ P     Y GTLDVF
Sbjct: 51  KTRLQAQAAGVSYHGLCRMAPFETMFSDVRYSPSCTRAALSDVPVCPPDCFQYRGTLDVF 110

Query: 120 YKIIRQEGYGRLWRGTNAALALAIPTVGIYLPCYDIFRNWIEDFTIQNAPYMTPYAPLVA 299
            K+IRQEG+ RLWRGT+A+LALA+PTVGIYLPCYDIFRN++E+FT QNAP +TPY PLVA
Sbjct: 111 SKMIRQEGFMRLWRGTSASLALAMPTVGIYLPCYDIFRNFMEEFTTQNAPSLTPYVPLVA 170

Query: 300 GSLARSIACISCYPIELARTRMQAFKE--SGLKPPGVWKTLVGVVSPVRSANNIQNLLP- 470
           GSLARS+ACI+CYP+ELARTRMQAFKE  SG KPPGVWKTL GV+SPVRS NNIQN    
Sbjct: 171 GSLARSLACITCYPVELARTRMQAFKETQSGTKPPGVWKTLHGVISPVRSTNNIQNFQSY 230

Query: 471 ---------------PFMDRCWSS 497
                          PF   CWS+
Sbjct: 231 RVLWTGLGAQLARDVPFSAICWST 254


>ref|XP_002276620.1| PREDICTED: solute carrier family 25 member 39-like [Vitis vinifera]
          Length = 407

 Score =  216 bits (550), Expect = 2e-54
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 41/206 (19%)
 Frame = +3

Query: 3   KTRLQAEAAGVPYS------------------HSHHRFRGHLS--PLGPNT---YSGTLD 113
           KTRLQA+AAGV Y                   +S    R  LS  P+ P     Y GTLD
Sbjct: 82  KTRLQAQAAGVSYHGLCRMAPFETVSMFSDVRYSPSCTRAALSDVPVCPPDCFQYRGTLD 141

Query: 114 VFYKIIRQEGYGRLWRGTNAALALAIPTVGIYLPCYDIFRNWIEDFTIQNAPYMTPYAPL 293
           VF K+IRQEG+ RLWRGT+A+LALA+PTVGIYLPCYDIFRN++E+FT QNAP +TPY PL
Sbjct: 142 VFSKMIRQEGFMRLWRGTSASLALAMPTVGIYLPCYDIFRNFMEEFTTQNAPSLTPYVPL 201

Query: 294 VAGSLARSIACISCYPIELARTRMQAFKE--SGLKPPGVWKTLVGVVSPVRSANNIQNLL 467
           VAGSLARS+ACI+CYP+ELARTRMQAFKE  SG KPPGVWKTL GV+SPVRS NNIQN  
Sbjct: 202 VAGSLARSLACITCYPVELARTRMQAFKETQSGTKPPGVWKTLHGVISPVRSTNNIQNFQ 261

Query: 468 P----------------PFMDRCWSS 497
                            PF   CWS+
Sbjct: 262 SYRVLWTGLGAQLARDVPFSAICWST 287


Top