BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030433
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi...   165   4e-39
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...   163   1e-38
emb|CBI23556.3| unnamed protein product [Vitis vinifera]              163   1e-38
ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
emb|CBI41122.3| unnamed protein product [Vitis vinifera]              162   3e-38

>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  165 bits (417), Expect = 4e-39
 Identities = 81/108 (75%), Positives = 90/108 (83%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           A+DA+DLFL+MELS +VPD FT SSV+SAC EL    LG+QLHSRVIR GLALDVCVGCS
Sbjct: 261 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 320

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCGGHDYE 3
           +VDMYAKCA  GS D+SRKVF+RMP HNVMSWTAIIT YVQ G  D E
Sbjct: 321 LVDMYAKCAADGSVDDSRKVFERMPEHNVMSWTAIITAYVQSGECDKE 368



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
 Frame = -1

Query: 317 AVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSG-LALDVCVGCSIV 141
           A+  FL+M    F P+ +  ++VI AC+      +G+ ++  V+++G L  DVCVGC ++
Sbjct: 161 AIWTFLDMLELGFYPNEYCFAAVIRACSNANHAWVGEIIYGFVVKTGYLEADVCVGCELI 220

Query: 140 DMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           DM+ K +  G    + KVFD+MP  N+++WT +IT + Q G
Sbjct: 221 DMFVKGS--GDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 259



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 61/100 (61%)
 Frame = -1

Query: 323 KDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCSI 144
           K+A++LF +M      P+ F+ SSV+ AC  L     G+Q++S  ++ G+A   CVG S+
Sbjct: 367 KEAIELFCKMISGHIWPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 426

Query: 143 VDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQ 24
           + MYA+    G  +++RK FD +   N++S+ AI+ GY +
Sbjct: 427 ISMYAR---SGRMEDARKAFDILFEKNLVSYNAIVDGYAK 463


>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/108 (74%), Positives = 90/108 (83%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           A+DA+DLFL+MELS +VPD FT SSV+SAC EL    LG+QLHSRVIR GLALDVCVGCS
Sbjct: 212 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 271

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCGGHDYE 3
           +VDMYAKCA  GS D+SRKVF++MP HNVMSWTAIIT YVQ G  D E
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKE 319



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
 Frame = -1

Query: 317 AVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSG-LALDVCVGCSIV 141
           A+  FL+M    F P+ +  ++VI AC+      +G+ ++  V+++G L  DVCVGC ++
Sbjct: 112 AIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELI 171

Query: 140 DMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           DM+ K +  G    + KVFD+MP  N+++WT +IT + Q G
Sbjct: 172 DMFVKGS--GDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 210



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 61/100 (61%)
 Frame = -1

Query: 323 KDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCSI 144
           K+A++LF +M      P+ F+ SSV+ AC  L     G+Q++S  ++ G+A   CVG S+
Sbjct: 318 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 377

Query: 143 VDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQ 24
           + MYA+    G  +++RK FD +   N++S+ AI+ GY +
Sbjct: 378 ISMYAR---SGRMEDARKAFDILFEKNLVSYNAIVDGYAK 414



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 31/103 (30%), Positives = 64/103 (62%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           +++A  LF E+  +     +FT +S++S  A + +   G+Q+H R+++ G   + C+  +
Sbjct: 418 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 477

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           ++ MY++C   G+ + + +VF+ M   NV+SWT++ITG+ + G
Sbjct: 478 LISMYSRC---GNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 517


>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/108 (74%), Positives = 90/108 (83%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           A+DA+DLFL+MELS +VPD FT SSV+SAC EL    LG+QLHSRVIR GLALDVCVGCS
Sbjct: 230 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 289

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCGGHDYE 3
           +VDMYAKCA  GS D+SRKVF++MP HNVMSWTAIIT YVQ G  D E
Sbjct: 290 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKE 337



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
 Frame = -1

Query: 317 AVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSG-LALDVCVGCSIV 141
           A+  FL+M    F P+ +  ++VI AC+      +G+ ++  V+++G L  DVCVGC ++
Sbjct: 130 AIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELI 189

Query: 140 DMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           DM+ K +  G    + KVFD+MP  N+++WT +IT + Q G
Sbjct: 190 DMFVKGS--GDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 228



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 61/100 (61%)
 Frame = -1

Query: 323 KDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCSI 144
           K+A++LF +M      P+ F+ SSV+ AC  L     G+Q++S  ++ G+A   CVG S+
Sbjct: 336 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 395

Query: 143 VDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQ 24
           + MYA+    G  +++RK FD +   N++S+ AI+ GY +
Sbjct: 396 ISMYAR---SGRMEDARKAFDILFEKNLVSYNAIVDGYAK 432



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 31/103 (30%), Positives = 64/103 (62%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           +++A  LF E+  +     +FT +S++S  A + +   G+Q+H R+++ G   + C+  +
Sbjct: 436 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 495

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           ++ MY++C   G+ + + +VF+ M   NV+SWT++ITG+ + G
Sbjct: 496 LISMYSRC---GNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 535


>ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  162 bits (409), Expect = 3e-38
 Identities = 79/108 (73%), Positives = 89/108 (82%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           A+DA+DLFL+MELS +VPD FT SSV+SAC EL    LG+QLHSRVIR GLALDVCVGCS
Sbjct: 32  ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 91

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCGGHDYE 3
           +VDMYAKCA  GS D+SRKVF++MP HNVMSWTAIIT Y Q G  D E
Sbjct: 92  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKE 139



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 61/100 (61%)
 Frame = -1

Query: 323 KDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCSI 144
           K+A++LF +M      P+ F+ SSV+ AC  L     G+Q++S  ++ G+A   CVG S+
Sbjct: 138 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 197

Query: 143 VDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQ 24
           + MYA+    G  +++RK FD +   N++S+ AI+ GY +
Sbjct: 198 ISMYAR---SGRMEDARKAFDILFEKNLVSYNAIVDGYAK 234



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 31/103 (30%), Positives = 64/103 (62%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           +++A  LF E+  +     +FT +S++S  A + +   G+Q+H R+++ G   + C+  +
Sbjct: 238 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 297

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           ++ MY++C   G+ + + +VF+ M   NV+SWT++ITG+ + G
Sbjct: 298 LISMYSRC---GNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 337


>emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  162 bits (409), Expect = 3e-38
 Identities = 79/108 (73%), Positives = 89/108 (82%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           A+DA+DLFL+MELS +VPD FT SSV+SAC EL    LG+QLHSRVIR GLALDVCVGCS
Sbjct: 37  ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 96

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCGGHDYE 3
           +VDMYAKCA  GS D+SRKVF++MP HNVMSWTAIIT Y Q G  D E
Sbjct: 97  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKE 144



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/100 (36%), Positives = 61/100 (61%)
 Frame = -1

Query: 323 KDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCSI 144
           K+A++LF +M      P+ F+ SSV+ AC  L     G+Q++S  ++ G+A   CVG S+
Sbjct: 143 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 202

Query: 143 VDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQ 24
           + MYA+    G  +++RK FD +   N++S+ AI+ GY +
Sbjct: 203 ISMYAR---SGRMEDARKAFDILFEKNLVSYNAIVDGYAK 239



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 31/103 (30%), Positives = 64/103 (62%)
 Frame = -1

Query: 326 AKDAVDLFLEMELSEFVPDSFTLSSVISACAELESFQLGQQLHSRVIRSGLALDVCVGCS 147
           +++A  LF E+  +     +FT +S++S  A + +   G+Q+H R+++ G   + C+  +
Sbjct: 243 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 302

Query: 146 IVDMYAKCATGGSFDESRKVFDRMPYHNVMSWTAIITGYVQCG 18
           ++ MY++C   G+ + + +VF+ M   NV+SWT++ITG+ + G
Sbjct: 303 LISMYSRC---GNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 342