BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030403
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28363.3| unnamed protein product [Vitis vinifera]              117   7e-25
ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi...   117   7e-25
gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]         96   3e-18
ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [S...    96   3e-18
ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16

>emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  117 bits (294), Expect = 7e-25
 Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LVSWNT I GYVHN  Y EALR+FQ +M E  +CDDF+L S+L AV+ L  L  G+EIHG
Sbjct: 288 LVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHG 347

Query: 183 YIIRAGLESDLYVISSLLDMYIE-FNYRSLGPMSKVPLKI 299
           YI+RAG+E++ YV+SSLLDMYI   ++ SL P  +VPLK+
Sbjct: 348 YILRAGIETNRYVVSSLLDMYIGCIDHESLYPRVEVPLKL 387



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/80 (38%), Positives = 56/80 (70%)
 Frame = +3

Query: 12  WNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHGYII 191
           W+ +I+G+  N  + EAL++F+ M  + +K ++FT TSV+ A   LE L+ G+E+H  I+
Sbjct: 432 WSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKIL 491

Query: 192 RAGLESDLYVISSLLDMYIE 251
           R+G ES+  V+++L+++Y E
Sbjct: 492 RSGYESNFSVVNTLINLYSE 511



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LV W++I++GYV N    E LR+F  M+S  ++ D F  + VL A T LE    G + H 
Sbjct: 187 LVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAHC 246

Query: 183 YIIRAGLESDLYVISSLLDMY 245
           YII+ G +S LY+ +SL+D Y
Sbjct: 247 YIIKMGFDSCLYLENSLMDFY 267


>ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 906

 Score =  117 bits (294), Expect = 7e-25
 Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LVSWNT I GYVHN  Y EALR+FQ +M E  +CDDF+L S+L AV+ L  L  G+EIHG
Sbjct: 229 LVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHG 288

Query: 183 YIIRAGLESDLYVISSLLDMYIE-FNYRSLGPMSKVPLKI 299
           YI+RAG+E++ YV+SSLLDMYI   ++ SL P  +VPLK+
Sbjct: 289 YILRAGIETNRYVVSSLLDMYIGCIDHESLYPRVEVPLKL 328



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/80 (38%), Positives = 56/80 (70%)
 Frame = +3

Query: 12  WNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHGYII 191
           W+ +I+G+  N  + EAL++F+ M  + +K ++FT TSV+ A   LE L+ G+E+H  I+
Sbjct: 408 WSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKIL 467

Query: 192 RAGLESDLYVISSLLDMYIE 251
           R+G ES+  V+++L+++Y E
Sbjct: 468 RSGYESNFSVVNTLINLYSE 487



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LV W++I++GYV N    E LR+F  M+S  ++ D F  + VL A T LE    G + H 
Sbjct: 128 LVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAHC 187

Query: 183 YIIRAGLESDLYVISSLLDMY 245
           YII+ G +S LY+ +SL+D Y
Sbjct: 188 YIIKMGFDSCLYLENSLMDFY 208


>gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]
          Length = 798

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LVSWNT+I  Y  N  + EA   F+AMM E  +CD+FTL S+L  VT   A   G EIHG
Sbjct: 285 LVSWNTVIQCYAENLCHEEASAHFRAMMFEFAECDEFTLGSILQVVTRTGAFGHGMEIHG 344

Query: 183 YIIRAGLESDLYVISSLLDMYIEFNYRSLGPMSKV-PLKI 299
           Y+IRAGL+SD +V+S+L+DMY+  N+ SLG   +V PL++
Sbjct: 345 YLIRAGLDSDKHVMSALMDMYV--NWASLGKTHRVIPLRM 382


>ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
           gi|241933759|gb|EES06904.1| hypothetical protein
           SORBIDRAFT_04g021580 [Sorghum bicolor]
          Length = 798

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 47/84 (55%), Positives = 60/84 (71%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LVSWNTII  Y  N  + EA   F+AMM E  +CD+FTL S+LH VT   A   G EIHG
Sbjct: 284 LVSWNTIIQCYAENLCHEEASAHFRAMMFEFAECDEFTLGSILHVVTATGAFGHGMEIHG 343

Query: 183 YIIRAGLESDLYVISSLLDMYIEF 254
           Y+IRAGL+SD +V+S+L+DMY+ +
Sbjct: 344 YLIRAGLDSDKHVMSALIDMYVNW 367


>ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 789

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 45/84 (53%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LVS NT+I  Y  N    +AL  F+AMM E  +CD+FTL S+LH VT   A   G EIHG
Sbjct: 274 LVSSNTVIQCYADNMCDEQALSHFRAMMFEGSECDEFTLGSILHVVTRRGAFDYGMEIHG 333

Query: 183 YIIRAGLESDLYVISSLLDMYIEF 254
           Y+IRAGL+SD +V+S+L+DMY+ +
Sbjct: 334 YLIRAGLDSDKHVMSALMDMYVNW 357



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/81 (34%), Positives = 49/81 (60%)
 Frame = +3

Query: 3   LVSWNTIITGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIHG 182
           LVSW ++++GY  N  + EA+ +F  M+   ++CD FTL+  L A + L  L LG ++H 
Sbjct: 173 LVSWTSMLSGYTENGCHAEAVMLFVEMVHAGIRCDAFTLSVALRAASSLANLSLGHQLHC 232

Query: 183 YIIRAGLESDLYVISSLLDMY 245
            II+ G  +  ++ + L++ Y
Sbjct: 233 CIIKLGFSNSGFLENCLIEFY 253