BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030398
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif...    88   6e-16
ref|XP_003593883.1| F-box protein SKIP19 [Medicago truncatula] g...    82   6e-14
ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycin...    80   2e-13
ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi...    79   3e-13
ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycin...    78   8e-13

>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
           gi|147853333|emb|CAN82327.1| hypothetical protein
           VITISV_041807 [Vitis vinifera]
           gi|297740788|emb|CBI30970.3| unnamed protein product
           [Vitis vinifera]
          Length = 321

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 49/113 (43%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   DLPRDVIILILTKLGLVEILCNAQWVCSLWRKITKDPQLFCSTCIPREWKYLSKLALNAY 182
           +LPRDV  +IL+KL  VEIL +AQ+VCS WRK+ ++P ++ +     +   L  L    Y
Sbjct: 22  ELPRDVTSMILSKLNAVEILSSAQFVCSFWRKLCREPMMWRNI----DMHNLGDLCDLGY 77

Query: 183 --EKLVIESVDRSCGQLVTFSCDFPVTDDLLHYVVDRSNTLKCLRLGACYDIS 335
             E++   +VDRS GQL++   D   TD+LL+Y++DRS+ ++ LRL +CY IS
Sbjct: 78  DLEEMARHAVDRSGGQLLSICIDDFATDNLLNYIIDRSSHIRHLRLVSCYGIS 130


>ref|XP_003593883.1| F-box protein SKIP19 [Medicago truncatula]
           gi|355482931|gb|AES64134.1| F-box protein SKIP19
           [Medicago truncatula]
          Length = 325

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 44/111 (39%), Positives = 68/111 (61%)
 Frame = +3

Query: 3   DLPRDVIILILTKLGLVEILCNAQWVCSLWRKITKDPQLFCSTCIPREWKYLSKLALNAY 182
           DLPRD ++ I  KL  +++L  A  VC+ WRKI+KDP LF +  +P   +   +L L   
Sbjct: 26  DLPRDAVLSIFRKLDAIDLLVRAHNVCTTWRKISKDPFLFRTINMPNLGEPDYQLDL--- 82

Query: 183 EKLVIESVDRSCGQLVTFSCDFPVTDDLLHYVVDRSNTLKCLRLGACYDIS 335
           E L   +VD SCG ++  + ++  TDDLLH + + ++ L+ LRL +C+ IS
Sbjct: 83  ETLCQRAVDYSCGHIIDINIEYFGTDDLLHRIANSASHLQRLRLASCWSIS 133


>ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 311

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   DLPRDVIILILTKLGLVEILCNAQWVCSLWRKITKDPQLFCSTCIPREWKYLSKLALNAY 182
           DLPRDV+  I  KLG  EIL  AQ VCS+WR I+K+P L+ +     + + L  + L+ +
Sbjct: 16  DLPRDVLCTIFQKLGATEILTRAQGVCSVWRAISKEPLLWRTI----DMRNLGDIGLDFH 71

Query: 183 -EKLVIESVDRSCGQLVTFSCDFPVTDDLLHYVVDRSNTLKCLRLGACYDIS 335
              +   ++D S G L+  + ++  TDDLLH++   ++ L+ LRL  CY IS
Sbjct: 72  LLAMCHRAIDYSSGHLLHINVEYFGTDDLLHHITHSTSNLRSLRLACCYQIS 123


>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
           gi|449490588|ref|XP_004158648.1| PREDICTED: F-box
           protein SKIP19-like [Cucumis sativus]
          Length = 311

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   DLPRDVIILILTKLGLVEILCNAQWVCSLWRKITKDPQLF--CSTCIPREWKYLSKLALN 176
           +LP DV  +IL KLG VEIL  AQ+VCS WRKI +DP ++       P +W  +      
Sbjct: 19  ELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMWRVIDMRYPCDWWDMD----Y 74

Query: 177 AYEKLVIESVDRSCGQLVTFSCDFPVTDDLLHYVVDRSNTLKCLRLGACYDIS 335
             E+L  ++V RSCGQL+ F+ +   TDDLL Y+    N L  LRL  C  IS
Sbjct: 75  NLEELCRQAVKRSCGQLIHFNIEHFGTDDLLLYITQSCNQLSRLRLVYCNRIS 127


>ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 318

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 42/111 (37%), Positives = 63/111 (56%)
 Frame = +3

Query: 3   DLPRDVIILILTKLGLVEILCNAQWVCSLWRKITKDPQLFCSTCIPREWKYLSKLALNAY 182
           DLPRDV+  I  KLG +EIL  AQ VCS+WR I+K+P L+ +  +       +     A 
Sbjct: 22  DLPRDVVCTIFQKLGAIEILTRAQRVCSVWRGISKEPLLWRTIDMRNSGDIETNFVFLA- 80

Query: 183 EKLVIESVDRSCGQLVTFSCDFPVTDDLLHYVVDRSNTLKCLRLGACYDIS 335
             +   ++D S G L+  + ++  TDDLL ++   ++ L+ LRL  CY IS
Sbjct: 81  --MCHRAIDYSSGHLLHINIEYFATDDLLRHITHSTSNLRSLRLACCYQIS 129