BLASTX nr result

ID: Coptis25_contig00030391 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030391
         (808 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273698.2| PREDICTED: charged multivesicular body prote...   229   5e-58
emb|CBI37046.3| unnamed protein product [Vitis vinifera]              229   5e-58
ref|XP_002302811.1| predicted protein [Populus trichocarpa] gi|2...   224   1e-56
ref|XP_002515169.1| Protein CHMP7, putative [Ricinus communis] g...   221   2e-55
ref|XP_004151427.1| PREDICTED: charged multivesicular body prote...   203   3e-50

>ref|XP_002273698.2| PREDICTED: charged multivesicular body protein 7 [Vitis vinifera]
          Length = 478

 Score =  229 bits (584), Expect = 5e-58
 Identities = 118/208 (56%), Positives = 151/208 (72%), Gaps = 3/208 (1%)
 Frame = +1

Query: 193 LSMSSVAEYIRHQVADWDDEVVTSGRFKAFSGQRSDWEPKYLFWKDLILKVARHLGVFTI 372
           +   +V E+IR +V DW++E + + RFKAFSGQRSDWE +Y FW+DLILKVARH  +  I
Sbjct: 41  MESEAVREFIRREVKDWEEEAIATARFKAFSGQRSDWEARYQFWRDLILKVARHFHLLFI 100

Query: 373 HSSQV-KDWFIRGGLTPLCIDRVLLEMYNTGEALRSEE--DTTSGRLSQLFKRVVHSIGI 543
            SSQV KDWF RGGLTPLC+D VL  MYN G+ +RS +  D TSGRLSQLF++V H +  
Sbjct: 101 SSSQVKKDWFNRGGLTPLCLDHVLFLMYNEGDIIRSVDLVDPTSGRLSQLFRKVKHMMVR 160

Query: 544 STSSSAPQEDRFILRTLLAERAGEVIRCLSESHWTSFCIITVEKFHTICNANASNDASAI 723
           STS+    ED  IL  LL ++  EV++ LSES WTS C+IT++KF  IC    + +ASA+
Sbjct: 161 STSAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDIC--GGTREASAV 218

Query: 724 LTYLSSNGKARLLSISKMDFIQGVKVSL 807
           L+YLS  GKA+ LSISK + I+GVKVSL
Sbjct: 219 LSYLSGCGKAQYLSISKKELIEGVKVSL 246


>emb|CBI37046.3| unnamed protein product [Vitis vinifera]
          Length = 438

 Score =  229 bits (584), Expect = 5e-58
 Identities = 118/208 (56%), Positives = 151/208 (72%), Gaps = 3/208 (1%)
 Frame = +1

Query: 193 LSMSSVAEYIRHQVADWDDEVVTSGRFKAFSGQRSDWEPKYLFWKDLILKVARHLGVFTI 372
           +   +V E+IR +V DW++E + + RFKAFSGQRSDWE +Y FW+DLILKVARH  +  I
Sbjct: 1   MESEAVREFIRREVKDWEEEAIATARFKAFSGQRSDWEARYQFWRDLILKVARHFHLLFI 60

Query: 373 HSSQV-KDWFIRGGLTPLCIDRVLLEMYNTGEALRSEE--DTTSGRLSQLFKRVVHSIGI 543
            SSQV KDWF RGGLTPLC+D VL  MYN G+ +RS +  D TSGRLSQLF++V H +  
Sbjct: 61  SSSQVKKDWFNRGGLTPLCLDHVLFLMYNEGDIIRSVDLVDPTSGRLSQLFRKVKHMMVR 120

Query: 544 STSSSAPQEDRFILRTLLAERAGEVIRCLSESHWTSFCIITVEKFHTICNANASNDASAI 723
           STS+    ED  IL  LL ++  EV++ LSES WTS C+IT++KF  IC    + +ASA+
Sbjct: 121 STSAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDIC--GGTREASAV 178

Query: 724 LTYLSSNGKARLLSISKMDFIQGVKVSL 807
           L+YLS  GKA+ LSISK + I+GVKVSL
Sbjct: 179 LSYLSGCGKAQYLSISKKELIEGVKVSL 206


>ref|XP_002302811.1| predicted protein [Populus trichocarpa] gi|222844537|gb|EEE82084.1|
           predicted protein [Populus trichocarpa]
          Length = 436

 Score =  224 bits (572), Expect = 1e-56
 Identities = 118/209 (56%), Positives = 153/209 (73%), Gaps = 5/209 (2%)
 Frame = +1

Query: 196 SMSSVAEYIRHQVADWDDEVVTSGRFKAFSGQRSDWEPKYLFWKDLILKVARHLGVFTIH 375
           S+SSV E+IR QV DWDDE++ + RFKAFSGQRSDWEPKYLFWKDLILK+ARHL +F I 
Sbjct: 3   SVSSVKEFIRKQVPDWDDEIMATARFKAFSGQRSDWEPKYLFWKDLILKIARHLDLFIIQ 62

Query: 376 SSQVKD-WFIRGGLTPLCIDRVLLEMYNTGEALRSEE--DTTSGRLSQLFKRVVHSIGIS 546
            SQVK+ WF RGGLTPLC+D VL  MYN G+ +R+ +  D +SGR+SQLF++V + +  S
Sbjct: 63  PSQVKEKWFNRGGLTPLCLDHVLCLMYNEGDIVRNVDLVDPSSGRISQLFRKVRNLMVRS 122

Query: 547 --TSSSAPQEDRFILRTLLAERAGEVIRCLSESHWTSFCIITVEKFHTICNANASNDASA 720
             T      ED   L  LL ++  ++I+CLSESHWTS CIIT+ KF  +C     ++A+ 
Sbjct: 123 PVTPEIIMLEDHLFLTPLLKDKTAQIIKCLSESHWTSSCIITMSKFQGMC--GGPSEAAP 180

Query: 721 ILTYLSSNGKARLLSISKMDFIQGVKVSL 807
           +L+YLS  GKA+  SISK + I+GVK+SL
Sbjct: 181 LLSYLSGLGKAQYFSISK-EVIEGVKISL 208


>ref|XP_002515169.1| Protein CHMP7, putative [Ricinus communis]
           gi|223545649|gb|EEF47153.1| Protein CHMP7, putative
           [Ricinus communis]
          Length = 438

 Score =  221 bits (562), Expect = 2e-55
 Identities = 109/209 (52%), Positives = 152/209 (72%), Gaps = 4/209 (1%)
 Frame = +1

Query: 193 LSMSSVAEYIRHQVADWDDEVVTSGRFKAFSGQRSDWEPKYLFWKDLILKVARHLGVFTI 372
           +  S V E+I  +V+DW++EV+ + RFKAFSGQRSDWEPKY FW++LILK+ARHLG+FTI
Sbjct: 1   MDSSMVMEFICKEVSDWNEEVIATARFKAFSGQRSDWEPKYQFWRNLILKIARHLGLFTI 60

Query: 373 HSSQVK-DWFIRGGLTPLCIDRVLLEMYNTGEALRSEE--DTTSGRLSQLFKRVVHSIGI 543
              QVK +WF RGGLTPLC+D VL  MY  G+ +R+ +  D TSGR SQL+++V + +  
Sbjct: 61  RPCQVKNEWFNRGGLTPLCLDHVLFLMYTEGDIIRNVDVVDATSGRFSQLYRKVTNLVIR 120

Query: 544 STSS-SAPQEDRFILRTLLAERAGEVIRCLSESHWTSFCIITVEKFHTICNANASNDASA 720
           ST++     ED  IL  LL E+A +VI+ LSE+HWT+ C++T+ KF  +C     N+AS 
Sbjct: 121 STTTPDLLLEDNLILTPLLKEKADQVIKLLSENHWTTSCVVTMRKFQDMC--GGPNEASV 178

Query: 721 ILTYLSSNGKARLLSISKMDFIQGVKVSL 807
           +L+Y S  GKA+ LS+ K +F++G+KVSL
Sbjct: 179 VLSYFSGVGKAQYLSVCKKEFVEGIKVSL 207


>ref|XP_004151427.1| PREDICTED: charged multivesicular body protein 7-like [Cucumis
           sativus]
          Length = 440

 Score =  203 bits (517), Expect = 3e-50
 Identities = 107/207 (51%), Positives = 142/207 (68%), Gaps = 5/207 (2%)
 Frame = +1

Query: 202 SSVAEYIRHQVADWDDEVVTSGRFKAFSGQRSDWEPKYLFWKDLILKVARHLGVFTIHSS 381
           S V E+IR +V DWDDEVV + RFKAFSGQ+SDWEP+YLFW+DLIL VAR      I  S
Sbjct: 8   SCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFNFLIIKPS 67

Query: 382 QVKD-WFIRGGLTPLCIDRVLLEMYNTGEALRSEE--DTTSGRLSQLFKRVVHSIGISTS 552
           ++K+ WF RGGLTPLC+D VL  MY  G+ +R  +  D  SG+LS +FK++ + +G S  
Sbjct: 68  EIKNQWFYRGGLTPLCLDHVLHLMYTGGDIIRRSDMLDPRSGQLSYMFKKLSNLMGTSKK 127

Query: 553 S--SAPQEDRFILRTLLAERAGEVIRCLSESHWTSFCIITVEKFHTICNANASNDASAIL 726
           +  S  ++D  +L  +L +RA EVI+CLS S WTS CIIT+ KF  IC     ++A+ IL
Sbjct: 128 NPDSLLRDDYIVLACVLQDRAAEVIKCLSLSSWTSSCIITMVKFQNIC--GGPDEATVIL 185

Query: 727 TYLSSNGKARLLSISKMDFIQGVKVSL 807
           +YL   GKA+ LS  K + ++GVKVSL
Sbjct: 186 SYLIECGKAKFLSKEKKELLEGVKVSL 212


Top