BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030374
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85304.1| putative retrotransposon protein [Phyllostachys e...   213   1e-53
gb|ABA95319.1| retrotransposon protein, putative, unclassified [...   213   2e-53
gb|AAP53789.1| retrotransposon protein, putative, unclassified [...   209   3e-52
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]        209   3e-52
emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]           207   7e-52

>gb|ADB85304.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 335

 Score =  213 bits (543), Expect = 1e-53
 Identities = 106/188 (56%), Positives = 134/188 (71%), Gaps = 3/188 (1%)
 Frame = +2

Query: 2   LAEWWFNTNYHTSLKMAPFTALYGYSPPH---LAILANVTHSIAAVDDYLKERQAMVEVI 172
           LAEWW+NT YHTSLK+ PF ALYGY PP    L+I  NV+         +++++ M+E +
Sbjct: 132 LAEWWYNTTYHTSLKVTPFQALYGYPPPQVGELSIPCNVSEEARIT---VEQKEQMLEQL 188

Query: 173 KDDLYKAQERMKFYADKKRTERSFAVGDWVYLKLQPYRQTSVALRKNLKLSAKFYGPFQV 352
           K +L+ AQ+RMK YADK RTER F VGD VYLK+QPYR T+  LR +LKL +KFYGPF+V
Sbjct: 189 KSNLHNAQDRMKHYADKSRTERQFQVGDMVYLKMQPYRLTAFGLRGSLKLRSKFYGPFRV 248

Query: 353 LARIGVVAYKLQLPIGSKIHPVFHVSQLKPKLGITITPVPQLPLVDQEGQFLVEPVAILS 532
           L ++G VAY+LQLP  + IHPVFHV+QLK  LG    P+  LPLV + G+   EPV +L 
Sbjct: 249 LEKLGTVAYRLQLPEHTLIHPVFHVNQLKKHLGSHAVPLTGLPLVGENGKIKTEPVVVLD 308

Query: 533 RRIVPRNN 556
           RRIVPR N
Sbjct: 309 RRIVPRRN 316


>gb|ABA95319.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 955

 Score =  213 bits (542), Expect = 2e-53
 Identities = 100/185 (54%), Positives = 130/185 (70%)
 Frame = +2

Query: 2    LAEWWFNTNYHTSLKMAPFTALYGYSPPHLAILANVTHSIAAVDDYLKERQAMVEVIKDD 181
            LAEWW+NT YHT+++M PF ALYGYSPP ++  +            L+E++ +V+ +K  
Sbjct: 736  LAEWWYNTTYHTAIQMTPFKALYGYSPPQISEFSVPCDVSQEARVTLEEKETIVQKLKAS 795

Query: 182  LYKAQERMKFYADKKRTERSFAVGDWVYLKLQPYRQTSVALRKNLKLSAKFYGPFQVLAR 361
            +  AQ RMK+YAD+ RTER   VGD VYLKLQPYRQ +  +R +LKL  K+YGPF+VL +
Sbjct: 796  MEDAQRRMKYYADRNRTERKLEVGDMVYLKLQPYRQNAFGIRGSLKLRGKYYGPFKVLEK 855

Query: 362  IGVVAYKLQLPIGSKIHPVFHVSQLKPKLGITITPVPQLPLVDQEGQFLVEPVAILSRRI 541
            +G VAY+LQLP  + IHPVFHVSQLK  LG    P+P LP V  +GQ   EPVA+L RR+
Sbjct: 856  VGAVAYRLQLPEEAAIHPVFHVSQLKKHLGTHAVPMPNLPAVGPDGQIKTEPVAVLQRRM 915

Query: 542  VPRNN 556
            +PRNN
Sbjct: 916  IPRNN 920


>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1611

 Score =  209 bits (531), Expect = 3e-52
 Identities = 96/185 (51%), Positives = 132/185 (71%)
 Frame = +2

Query: 2    LAEWWFNTNYHTSLKMAPFTALYGYSPPHLAILANVTHSIAAVDDYLKERQAMVEVIKDD 181
            LAEWW+NT YHTS++M PF ALYGY PP +   A   +        L+++  +++ +K  
Sbjct: 1392 LAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLEDKALILQKLKSS 1451

Query: 182  LYKAQERMKFYADKKRTERSFAVGDWVYLKLQPYRQTSVALRKNLKLSAKFYGPFQVLAR 361
            + +AQ R+KFYADK R+ER+  +GD VYLKLQPYRQ ++ +R +LKL +K+YGPF+V+ +
Sbjct: 1452 IGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEK 1511

Query: 362  IGVVAYKLQLPIGSKIHPVFHVSQLKPKLGITITPVPQLPLVDQEGQFLVEPVAILSRRI 541
            +G VAYKLQLP G+ IHPVFHVSQLK  LG    P+P LP +  +GQ   EP A+L RR+
Sbjct: 1512 MGAVAYKLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRM 1571

Query: 542  VPRNN 556
            +PR+N
Sbjct: 1572 IPRHN 1576


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score =  209 bits (531), Expect = 3e-52
 Identities = 99/186 (53%), Positives = 134/186 (72%), Gaps = 3/186 (1%)
 Frame = +2

Query: 2    LAEWWFNTNYHTSLKMAPFTALYGYSPPHL---AILANVTHSIAAVDDYLKERQAMVEVI 172
            LAEWW+NT YHTS++M PF ALYGY PP +   ++  NV+         ++++ A+++ +
Sbjct: 1367 LAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVT---IEQKDAIIQKL 1423

Query: 173  KDDLYKAQERMKFYADKKRTERSFAVGDWVYLKLQPYRQTSVALRKNLKLSAKFYGPFQV 352
            K  L +AQ R+K YAD+ R+ER+ AVGD VYLKLQPYRQT+  +R +LKL +KFYGPF++
Sbjct: 1424 KYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKI 1483

Query: 353  LARIGVVAYKLQLPIGSKIHPVFHVSQLKPKLGITITPVPQLPLVDQEGQFLVEPVAILS 532
            + ++G VAYKLQLP GS IHPVFHVSQLK  +G    P+  LP V  +GQ   EPVA+L 
Sbjct: 1484 MEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKTEPVAVLK 1543

Query: 533  RRIVPR 550
            RR++PR
Sbjct: 1544 RRMIPR 1549


>emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]
          Length = 1434

 Score =  207 bits (528), Expect = 7e-52
 Identities = 104/187 (55%), Positives = 134/187 (71%), Gaps = 3/187 (1%)
 Frame = +2

Query: 5    AEWWFNTNYHTSLKMAPFTALYGYSPPH---LAILANVTHSIAAVDDYLKERQAMVEVIK 175
            AEWW+NT+YHTSL++ P+ ALYG  PP     AI  NVT  I       ++R+ ++  +K
Sbjct: 1232 AEWWYNTSYHTSLQVTPYEALYGVHPPQNGEQAIPGNVTEEIRIT---AQQREELMLRLK 1288

Query: 176  DDLYKAQERMKFYADKKRTERSFAVGDWVYLKLQPYRQTSVALRKNLKLSAKFYGPFQVL 355
            D+L +AQ R+K +AD+ R+ERSF  GD VYLK+QPYRQ +  LR +LKL AKFYGPF++L
Sbjct: 1289 DNLLRAQNRIKKFADRLRSERSFQEGDMVYLKMQPYRQNTFGLRGSLKLRAKFYGPFRIL 1348

Query: 356  ARIGVVAYKLQLPIGSKIHPVFHVSQLKPKLGITITPVPQLPLVDQEGQFLVEPVAILSR 535
             RIG VAY LQLP  + IHPVFHVSQLK  +G    P+P LPLVD++G    EPVA+L+R
Sbjct: 1349 KRIGKVAYHLQLPEEAGIHPVFHVSQLKKHVGNLAVPLPNLPLVDEDGNIKAEPVAVLAR 1408

Query: 536  RIVPRNN 556
            R+VPR N
Sbjct: 1409 RVVPRRN 1415