BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030298
         (937 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         219   3e-72
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   219   3e-72
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   219   3e-72
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   217   2e-71
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   213   2e-70

>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  219 bits (558), Expect(2) = 3e-72
 Identities = 109/181 (60%), Positives = 132/181 (72%)
 Frame = +2

Query: 5    KTSCRAQAPLELVHADVFGPTRTPSLNNKIYFLLFVDDYTRMMWIYFLEQKSEAFSVFLN 184
            ++S RAQ PLEL+H DV GP +  SL    YFLLF+DD++R  W+YFL++KSE F +F  
Sbjct: 518  ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 185  FMACVERESGRNPKTLRTYRGGEFIYKEFWNYCKEKGIKRQLTVRHTQQQNGVTERKNRT 364
            F A VE+ESG   KT+R+ RGGEF  KEF  YC++ GI+RQLTV  + QQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRT 637

Query: 365  IAEMARSMLKGKALPNQFWAEAVNMTIYILNRSPATKAVPSKTPYEAWHERKPQVKLLKV 544
            I EMARSMLK K LP + WAEAV   +Y+LNRSP TK+V  KTP EAW  RKP V  L+V
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP-TKSVSGKTPQEAWSGRKPGVSHLRV 696

Query: 545  F 547
            F
Sbjct: 697  F 697



 Score = 79.7 bits (195), Expect(2) = 3e-72
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +3

Query: 531 SYSKFFGYPAFALVPSQEREKFDEK*EKYIFIGYGDESKGFRLYSPTSKKLVVSRDVVFD 710
           S+ + FG  A A VP ++R K D+K EKYIFIGY + SKG++LY+P +KK ++SR++VFD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751

Query: 711 EMGK*NWD 734
           E G+ +W+
Sbjct: 752 EEGEWDWN 759


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  219 bits (558), Expect(2) = 3e-72
 Identities = 109/181 (60%), Positives = 132/181 (72%)
 Frame = +2

Query: 5    KTSCRAQAPLELVHADVFGPTRTPSLNNKIYFLLFVDDYTRMMWIYFLEQKSEAFSVFLN 184
            ++S RAQ PLEL+H DV GP +  SL    YFLLF+DD++R  W+YFL++KSE F +F  
Sbjct: 518  ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 185  FMACVERESGRNPKTLRTYRGGEFIYKEFWNYCKEKGIKRQLTVRHTQQQNGVTERKNRT 364
            F A VE+ESG   KT+R+ RGGEF  KEF  YC++ GI+RQLTV  + QQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRT 637

Query: 365  IAEMARSMLKGKALPNQFWAEAVNMTIYILNRSPATKAVPSKTPYEAWHERKPQVKLLKV 544
            I EMARSMLK K LP + WAEAV   +Y+LNRSP TK+V  KTP EAW  RKP V  L+V
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP-TKSVSGKTPQEAWSGRKPGVSHLRV 696

Query: 545  F 547
            F
Sbjct: 697  F 697



 Score = 79.7 bits (195), Expect(2) = 3e-72
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +3

Query: 531 SYSKFFGYPAFALVPSQEREKFDEK*EKYIFIGYGDESKGFRLYSPTSKKLVVSRDVVFD 710
           S+ + FG  A A VP ++R K D+K EKYIFIGY + SKG++LY+P +KK ++SR++VFD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751

Query: 711 EMGK*NWD 734
           E G+ +W+
Sbjct: 752 EEGEWDWN 759


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  219 bits (558), Expect(2) = 3e-72
 Identities = 109/181 (60%), Positives = 132/181 (72%)
 Frame = +2

Query: 5    KTSCRAQAPLELVHADVFGPTRTPSLNNKIYFLLFVDDYTRMMWIYFLEQKSEAFSVFLN 184
            ++S RAQ PLEL+H DV GP +  SL    YFLLF+DD++R  W+YFL++KSE F +F  
Sbjct: 518  ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 185  FMACVERESGRNPKTLRTYRGGEFIYKEFWNYCKEKGIKRQLTVRHTQQQNGVTERKNRT 364
            F A VE+ESG   KT+R+ RGGEF  KEF  YC++ GI+RQLTV  + QQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637

Query: 365  IAEMARSMLKGKALPNQFWAEAVNMTIYILNRSPATKAVPSKTPYEAWHERKPQVKLLKV 544
            I EMARSMLK K LP + WAEAV   +Y+LNRSP TK+V  KTP EAW  RKP V  L+V
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP-TKSVSGKTPQEAWSGRKPGVSHLRV 696

Query: 545  F 547
            F
Sbjct: 697  F 697



 Score = 79.7 bits (195), Expect(2) = 3e-72
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +3

Query: 531 SYSKFFGYPAFALVPSQEREKFDEK*EKYIFIGYGDESKGFRLYSPTSKKLVVSRDVVFD 710
           S+ + FG  A A VP ++R K D+K EKYIFIGY + SKG++LY+P +KK ++SR++VFD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751

Query: 711 EMGK*NWD 734
           E G+ +W+
Sbjct: 752 EEGEWDWN 759


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  217 bits (552), Expect(2) = 2e-71
 Identities = 108/181 (59%), Positives = 131/181 (72%)
 Frame = +2

Query: 5    KTSCRAQAPLELVHADVFGPTRTPSLNNKIYFLLFVDDYTRMMWIYFLEQKSEAFSVFLN 184
            ++S RAQ PLEL+H DV GP +  SL    YFLLF+DD++R  W+YFL++KSE F +F  
Sbjct: 518  ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 185  FMACVERESGRNPKTLRTYRGGEFIYKEFWNYCKEKGIKRQLTVRHTQQQNGVTERKNRT 364
            F A VE+ESG   KT+R+  GGEF  KEF  YC++ GI+RQLTV  + QQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637

Query: 365  IAEMARSMLKGKALPNQFWAEAVNMTIYILNRSPATKAVPSKTPYEAWHERKPQVKLLKV 544
            I EMARSMLK K LP + WAEAV   +Y+LNRSP TK+V  KTP EAW  RKP V  L+V
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP-TKSVSGKTPQEAWSGRKPGVSHLRV 696

Query: 545  F 547
            F
Sbjct: 697  F 697



 Score = 79.7 bits (195), Expect(2) = 2e-71
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +3

Query: 531 SYSKFFGYPAFALVPSQEREKFDEK*EKYIFIGYGDESKGFRLYSPTSKKLVVSRDVVFD 710
           S+ + FG  A A VP ++R K D+K EKYIFIGY + SKG++LY+P +KK ++SR++VFD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751

Query: 711 EMGK*NWD 734
           E G+ +W+
Sbjct: 752 EEGEWDWN 759


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  213 bits (542), Expect(2) = 2e-70
 Identities = 107/181 (59%), Positives = 130/181 (71%)
 Frame = +2

Query: 5    KTSCRAQAPLELVHADVFGPTRTPSLNNKIYFLLFVDDYTRMMWIYFLEQKSEAFSVFLN 184
            ++S RAQ  LEL+H DV GP +  SL    YFLLF+DD++R  W+YFL++KSE F +F  
Sbjct: 518  ESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 185  FMACVERESGRNPKTLRTYRGGEFIYKEFWNYCKEKGIKRQLTVRHTQQQNGVTERKNRT 364
            F A VE+ESG   KT+R+ RGGEF  KEF  YC++ GI+RQLTV  + QQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637

Query: 365  IAEMARSMLKGKALPNQFWAEAVNMTIYILNRSPATKAVPSKTPYEAWHERKPQVKLLKV 544
            I EMARSMLK K LP + WAEAV   +Y+LNRSP TK+V  KTP EAW  RK  V  L+V
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP-TKSVSGKTPQEAWSGRKSGVSHLRV 696

Query: 545  F 547
            F
Sbjct: 697  F 697



 Score = 79.7 bits (195), Expect(2) = 2e-70
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +3

Query: 531 SYSKFFGYPAFALVPSQEREKFDEK*EKYIFIGYGDESKGFRLYSPTSKKLVVSRDVVFD 710
           S+ + FG  A A VP ++R K D+K EKYIFIGY + SKG++LY+P +KK ++SR++VFD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751

Query: 711 EMGK*NWD 734
           E G+ +W+
Sbjct: 752 EEGEWDWN 759