BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030241
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 98   8e-19
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               84   9e-15
ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|2...    83   2e-14
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    78   6e-13
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]            77   2e-12

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 43/101 (42%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
 Frame = +1

Query: 94  PPMNT--SFSIQNISNMIPLKLKRDNYLMWKQVFLPLLKTHDLMGFIEGTNICPPKFLMN 267
           PP+ T  + SI N++ M+P KL R NY+ W+ +F+P+LK   L+G + G ++CPP F+ +
Sbjct: 257 PPIMTLGTISITNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVRD 316

Query: 268 NAGIYSTVVNNPQYVVWVKSDQMLLIWINATLSEELLPYVV 390
            +G   T V N  +  W + DQ+L+IWIN+TLS++LLP  +
Sbjct: 317 PSG---TCVPNASFETWCERDQILMIWINSTLSKDLLPLTI 354


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
 Frame = +1

Query: 100 MNTSFSIQN---ISNMIPLKLKRDNYLMWKQVFLPLLKTHDLMGFIEGTNICPPKFLMNN 270
           M +S S +N   +SN + +KL R NY +W     P+LK+  L GF++GTN+CPP FL + 
Sbjct: 1   MASSSSTENTPSVSNFLTIKLDRTNYPLWLAQITPILKSRKLWGFVDGTNLCPPCFLKDK 60

Query: 271 AGIYSTVVNNPQYVVWVKSDQMLLIWINATLSEELLPYV 387
           AG  +  V NP +  W+  DQM+L WIN +L+ ++L  V
Sbjct: 61  AGQLTDQV-NPDFEPWILQDQMVLSWINGSLTPKVLSTV 98


>ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|222871802|gb|EEF08933.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/95 (42%), Positives = 59/95 (62%)
 Frame = +1

Query: 103 NTSFSIQNISNMIPLKLKRDNYLMWKQVFLPLLKTHDLMGFIEGTNICPPKFLMNNAGIY 282
           +T   + + S  + +KL R NY +W    +P+LK+ +LMGF+ GTN CPP+F  N  G  
Sbjct: 7   STGVVVPSHSGFMSIKLDRTNYPLWLAQIVPILKSKNLMGFVTGTNPCPPEFKSNTDGTI 66

Query: 283 STVVNNPQYVVWVKSDQMLLIWINATLSEELLPYV 387
           +T V +P+Y  W + DQM+L WIN +LS  +L  V
Sbjct: 67  TTEV-DPRYATWHQQDQMILSWINNSLSPTVLSTV 100


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 47/108 (43%), Positives = 59/108 (54%)
 Frame = +1

Query: 55  NYNFTSFNAPMVVPPMNTSFSIQNISNMIPLKLKRDNYLMWKQVFLPLLKTHDLMGFIEG 234
           N N TS     ++PP  T  S++   +         NYL WK  FL LL+ HDLMGFI+G
Sbjct: 3   NTNDTSIPVS-ILPPSTTIISVKLDGS--------HNYLAWKMQFLNLLRGHDLMGFIDG 53

Query: 235 TNICPPKFLMNNAGIYSTVVNNPQYVVWVKSDQMLLIWINATLSEELL 378
           T  CPPK   + +        NP YVVW K D  LL WI A+LSE+L+
Sbjct: 54  TEACPPKHTASGS-------LNPAYVVWQKKDVCLLGWILASLSEKLV 94


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/88 (44%), Positives = 52/88 (59%)
 Frame = +1

Query: 124 NISNMIPLKLKRDNYLMWKQVFLPLLKTHDLMGFIEGTNICPPKFLMNNAGIYSTVVNNP 303
           ++S+ + LKL   NYL+WK  F  LL  H L+GF+ G    PP+ L    G  S  V NP
Sbjct: 12  HVSSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANP 71

Query: 304 QYVVWVKSDQMLLIWINATLSEELLPYV 387
           QY  W  +DQ++  W+  TLSEE+L YV
Sbjct: 72  QYESWFCTDQLIRSWLFGTLSEEVLGYV 99