BLASTX nr result

ID: Coptis25_contig00030154 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030154
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524384.1| conserved hypothetical protein [Ricinus comm...   103   1e-20
ref|XP_003631229.1| PREDICTED: uncharacterized protein LOC100262...    97   1e-18
emb|CAN74875.1| hypothetical protein VITISV_038922 [Vitis vinifera]    97   1e-18
ref|XP_002315967.1| predicted protein [Populus trichocarpa] gi|2...    96   2e-18
dbj|BAK00452.1| predicted protein [Hordeum vulgare subsp. vulgare]     95   7e-18

>ref|XP_002524384.1| conserved hypothetical protein [Ricinus communis]
           gi|223536345|gb|EEF37995.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 255

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/53 (90%), Positives = 52/53 (98%)
 Frame = +1

Query: 1   GVLPGKGAGSEGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 159
           GVLPG GAGS+GELMYMRA+FERVVGS+DSEAFYMMNPDGSGGPELS+YLLRV
Sbjct: 203 GVLPGNGAGSDGELMYMRARFERVVGSKDSEAFYMMNPDGSGGPELSVYLLRV 255


>ref|XP_003631229.1| PREDICTED: uncharacterized protein LOC100262757 [Vitis vinifera]
           gi|297737883|emb|CBI27084.3| unnamed protein product
           [Vitis vinifera]
          Length = 262

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 48/54 (88%), Positives = 50/54 (92%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1   GVLPGKG-AGSEGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 159
           GVLPG G  GSEGELMYMRAKFERVVGS+DSEAFYMMNPD +GGPELSIYLLRV
Sbjct: 209 GVLPGNGETGSEGELMYMRAKFERVVGSKDSEAFYMMNPDSTGGPELSIYLLRV 262


>emb|CAN74875.1| hypothetical protein VITISV_038922 [Vitis vinifera]
          Length = 248

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 48/54 (88%), Positives = 50/54 (92%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1   GVLPGKG-AGSEGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 159
           GVLPG G  GSEGELMYMRAKFERVVGS+DSEAFYMMNPD +GGPELSIYLLRV
Sbjct: 195 GVLPGNGETGSEGELMYMRAKFERVVGSKDSEAFYMMNPDSTGGPELSIYLLRV 248


>ref|XP_002315967.1| predicted protein [Populus trichocarpa] gi|222865007|gb|EEF02138.1|
           predicted protein [Populus trichocarpa]
          Length = 263

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 2/55 (3%)
 Frame = +1

Query: 1   GVLPGKGA-GSE-GELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 159
           GVLPG GA GSE GELMYMRA+FERVVGS+DSEAFYMMNPDGSGGPELSIYLLRV
Sbjct: 209 GVLPGNGAAGSEIGELMYMRARFERVVGSKDSEAFYMMNPDGSGGPELSIYLLRV 263


>dbj|BAK00452.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 258

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 48/55 (87%), Positives = 49/55 (89%), Gaps = 2/55 (3%)
 Frame = +1

Query: 1   GVLPGKGAGS--EGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 159
           GVLP  GA    EG+LMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV
Sbjct: 204 GVLPDDGAAGAGEGDLMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 258


Top